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BioLiP
>rna
gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccaggguucaagucccuguucgggcgcca

The query sequence (length=75) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jag:3 75 75 1.0000 1.0000 1.0000 1.57e-34 3jah:3, 3jai:3, 5lzs:3, 5lzt:3, 5lzu:3, 5lzv:3, 5lzw:3, 5lzx:3, 5lzy:2, 5lzy:3, 5lzz:3, 6mtb:4, 6mtc:4, 8scb:3
2 7nwg:33 75 75 0.9867 0.9867 0.9867 2.63e-32
3 6r5q:3 75 75 0.9733 0.9733 0.9733 3.40e-31 6r6g:3, 6r6p:3, 6r7q:3
4 5ccb:N 77 76 0.9867 0.9610 0.9737 3.40e-31 5ccx:N
5 5cd1:N 76 75 0.9733 0.9605 0.9733 1.22e-30
6 6sgc:23 76 76 0.9733 0.9605 0.9605 1.58e-29 6sgc:33
7 5cd1:M 74 75 0.9467 0.9595 0.9467 9.52e-27
8 7mrl:A 75 73 0.8533 0.8533 0.8767 2.69e-17
9 8d9k:C 65 72 0.8400 0.9692 0.8750 1.25e-15 8d9l:C, 8eg0:C
10 6wb1:D 42 31 0.4133 0.7381 1.0000 4.53e-10 6wb2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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