Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>rna
gccaggauguaggcuuagaagcagccaucauuuaaagaaagcguaauagcucacuggu

The query sequence (length=58) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1c04:E 58 58 1.0000 1.0000 1.0000 3.17e-25 1hc8:C, 1hc8:D, 1qa6:C, 1qa6:D
2 6ztm:BA 2901 58 0.9828 0.0196 0.9828 1.48e-23
3 6ztl:BA 2899 58 0.9828 0.0197 0.9828 1.48e-23 6ztn:BA
4 6ztj:BA 2900 58 0.9828 0.0197 0.9828 1.48e-23 6zto:BA, 6ztp:BA, 6zu1:BA
5 7zq5:b 2900 58 0.9828 0.0197 0.9828 1.48e-23
6 7zod:b 2901 58 0.9828 0.0196 0.9828 1.48e-23 7zp8:b, 7zq6:b
7 7z20:b 2901 58 0.9828 0.0196 0.9828 1.48e-23
8 6y69:A 2887 58 0.9828 0.0197 0.9828 1.48e-23
9 6wnw:4 3031 58 0.9828 0.0188 0.9828 1.48e-23
10 6wnt:4 3025 58 0.9828 0.0188 0.9828 1.48e-23 6wnv:4
11 5wdt:A 2900 58 0.9828 0.0197 0.9828 1.48e-23 5we4:A, 5we6:A, 5wf0:A, 5wfk:A, 5wfs:A
12 4v9d:DA 2896 58 0.9828 0.0197 0.9828 1.48e-23
13 4v85:BA 2853 58 0.9828 0.0200 0.9828 1.48e-23 4v89:BA
14 4v4v:B0 2740 58 0.9828 0.0208 0.9828 1.48e-23 4v4w:B0
15 8upo:a 2880 58 0.9828 0.0198 0.9828 1.48e-23 8upr:a, 8uql:a, 8uqm:a, 8uqp:a, 8ur0:a, 8urh:a, 8uri:a, 8urx:a, 8ury:a, 6vu3:a, 6vyq:a, 6vyr:a, 6vys:a, 6vyt:a, 6vyu:a, 6vyw:a, 6vyx:a, 6vyy:a, 6vyz:a, 6vz2:a, 6vz3:a, 6vz5:a, 6vz7:a, 6vzj:a, 6x6t:a, 6x7f:a, 6x7k:a, 6x9q:a, 6xdq:a, 6xdr:a, 6xgf:a, 6xii:a, 6xij:a
16 7uph:I 4438 58 0.9828 0.0128 0.9828 1.48e-23
17 5u9f:01 2903 58 0.9828 0.0196 0.9828 1.48e-23 5u9g:01
18 6qul:A 2795 58 0.9828 0.0204 0.9828 1.48e-23
19 6qdw:b 2888 58 0.9828 0.0197 0.9828 1.48e-23 6ys3:b
20 8pkl:7 2904 58 0.9828 0.0196 0.9828 1.48e-23 8r3v:72, 8rcl:72, 8rcm:72, 8rcs:72, 8rct:72
21 7pjt:A 2902 58 0.9828 0.0196 0.9828 1.48e-23
22 8phj:a 2862 58 0.9828 0.0199 0.9828 1.48e-23
23 7otc:A 2903 58 0.9828 0.0196 0.9828 1.48e-23
24 7oj0:a 2807 58 0.9828 0.0203 0.9828 1.48e-23
25 5np6:Y 2903 58 0.9828 0.0196 0.9828 1.48e-23 7pjs:A, 7pju:A, 7pjv:A, 7pjw:A, 7pjx:A, 7pjy:A, 7pjz:A
26 7nbu:a 2900 58 0.9828 0.0197 0.9828 1.48e-23
27 7n2v:23 2904 58 0.9828 0.0196 0.9828 1.48e-23 7n31:23, 4v6k:AB, 4v6l:BB, 4v6m:B8, 4v6n:AB, 4v6o:BB, 4v6p:BB, 4v6q:BB, 4v6r:BB, 4v6s:AB, 4v6v:BA
28 7n2u:23 2902 58 0.9828 0.0196 0.9828 1.48e-23
29 7n1p:23 2904 58 0.9828 0.0196 0.9828 1.48e-23
30 5lza:A 2900 58 0.9828 0.0197 0.9828 1.48e-23 5lze:A, 5lzf:A
31 6lkq:t 2850 58 0.9828 0.0200 0.9828 1.48e-23
32 5l3p:A 2890 58 0.9828 0.0197 0.9828 1.48e-23
33 5kcs:1A 2900 58 0.9828 0.0197 0.9828 1.48e-23
34 5kcr:1A 2897 58 0.9828 0.0197 0.9828 1.48e-23
35 3ja1:LA 2904 58 0.9828 0.0196 0.9828 1.48e-23
36 3j9z:LA 2904 58 0.9828 0.0196 0.9828 1.48e-23
37 3j8g:B 2874 58 0.9828 0.0198 0.9828 1.48e-23
38 3j5l:A 2853 58 0.9828 0.0200 0.9828 1.48e-23
39 6hrm:1 4450 58 0.9828 0.0128 0.9828 1.48e-23
40 6h4n:A 2900 58 0.9828 0.0197 0.9828 1.48e-23 6h58:A, 6h58:AA, 5mgp:A
41 6gxn:A 2895 58 0.9828 0.0197 0.9828 1.48e-23
42 6gwt:A 2896 58 0.9828 0.0197 0.9828 1.48e-23 6gxm:A, 6gxp:A
43 6gc0:A 2729 58 0.9828 0.0209 0.9828 1.48e-23
44 6gbz:A 2789 58 0.9828 0.0204 0.9828 1.48e-23
45 5gae:A 2884 58 0.9828 0.0198 0.9828 1.48e-23
46 5gad:A 2883 58 0.9828 0.0198 0.9828 1.48e-23 5gaf:A, 5gag:A, 5gah:A, 5nco:A, 6s0k:A
47 8fzd:A 2899 58 0.9828 0.0197 0.9828 1.48e-23 8fze:A, 8fzf:A, 8fzg:A, 8fzh:A, 8fzi:A, 8fzj:A, 8g7p:A, 8g7q:A, 8g7r:A, 8g7s:A, 8p16:1, 8p17:1, 8p18:1, 8qk7:1
48 6enj:A 2871 58 0.9828 0.0199 0.9828 1.48e-23 6enu:A
49 6enf:A 2807 58 0.9828 0.0203 0.9828 1.48e-23
50 8e33:I 2897 58 0.9828 0.0197 0.9828 1.48e-23 8e36:I, 8e3l:I, 8e3o:I, 8e43:I, 8e45:I, 8e46:I, 6pc5:I, 6pc6:I, 6pc7:I, 6pc8:I, 6pch:I, 6pcq:I, 6pcr:I, 6pcs:I, 6pct:I, 6wyv:I
51 6dnc:B 2903 58 0.9828 0.0196 0.9828 1.48e-23 5kps:28, 5kpv:27, 5kpw:27, 5kpx:27, 6ysr:A, 6yss:A, 6yst:A, 6ysu:A
52 3deg:G 70 58 0.9828 0.8143 0.9828 1.48e-23
53 6by1:DA 2869 58 0.9828 0.0199 0.9828 1.48e-23
54 6by1:CA 2867 58 0.9828 0.0199 0.9828 1.48e-23
55 7bv8:A 2897 58 0.9828 0.0197 0.9828 1.48e-23 5h5u:A
56 6bu8:01 2903 58 0.9828 0.0196 0.9828 1.48e-23 7jss:1, 7jsw:1, 7jsz:1, 7jt1:1, 7jt2:1, 7jt3:1, 7k50:1, 7k51:1, 7k52:1, 7k53:1, 7k54:1, 7k55:1, 7lv0:1, 6ofx:1, 6og7:1, 6ogf:1, 6ogg:1, 6ogi:1, 7ss9:1, 7ssd:1, 7ssl:1, 7ssn:1, 7sso:1, 7ssw:1, 7st2:1, 7st6:1, 7st7:1, 7tos:23S, 5uyk:01, 5uyl:01, 5uym:01, 5uyn:01, 5uyp:01, 5uyq:01, 8vs9:23S, 8vsa:23S, 6wd0:1, 6wd1:1, 6wd2:1, 6wd3:1, 6wd4:1, 6wd5:1, 6wd6:1, 6wd7:1, 6wd8:1, 6wd9:1, 6wda:1, 6wdb:1, 6wdc:1, 6wdd:1, 6wde:1, 6wdf:1, 6wdg:1, 6wdh:1, 6wdi:1, 6wdj:1, 6wdk:1, 6wdl:1, 6wdm:1
57 7bl5:A 2913 58 0.9828 0.0196 0.9828 1.48e-23
58 7bl2:A 2902 58 0.9828 0.0196 0.9828 1.48e-23 7bl3:A
59 3bbx:B 2902 58 0.9828 0.0196 0.9828 1.48e-23
60 8b7y:I 2898 58 0.9828 0.0197 0.9828 1.48e-23 8e30:I, 8e32:I, 8e35:I, 8e3m:I, 8e41:I, 8e42:I, 8e44:I, 8e47:I, 8e48:I, 8e49:I, 6i7v:CA, 5it8:CA, 5j5b:CA, 5j7l:CA, 5j88:CA, 5j8a:CA, 5j91:CA, 5jc9:CA, 7lvk:I, 6pj6:I, 7qq3:I, 7s1g:I, 7s1h:I, 7s1i:I, 7s1j:I, 7s1k:I, 6u48:CA, 4ybb:CA
61 7b5k:A 2897 58 0.9828 0.0197 0.9828 1.48e-23 7bl4:A, 7bl6:A, 8fiz:BA, 6gc8:A, 6i7v:DA, 5it8:DA, 5j5b:DA, 5j7l:DA, 5j88:DA, 5j8a:DA, 5j91:DA, 3jcn:A, 5jc9:DA, 5jte:BA, 5ju8:BA, 5nwy:N, 7o19:BA, 7o1a:BA, 7o1c:BA, 7q4k:BA, 7qg8:N, 7qgh:N, 7qgn:N, 7qgr:N, 6tbv:23S1, 6tc3:23S1, 4u1u:BA, 4u1u:DA, 4u1v:BA, 4u1v:DA, 4u20:BA, 4u20:DA, 4u24:BA, 4u24:DA, 4u25:BA, 4u25:DA, 4u26:BA, 4u26:DA, 4u27:BA, 4u27:DA, 4v9c:BA, 4v9c:DA, 4v9d:CA, 4wf1:BA, 4wf1:DA, 4woi:BA, 4woi:CA, 6xz7:A, 6xza:A2, 6xzb:A2, 4ybb:DA
62 9ax8:A 2854 58 0.9828 0.0200 0.9828 1.48e-23 6i0y:A, 3j7z:A, 3jcj:A, 6o9k:A, 4uy8:A, 4v6c:BA, 4v6d:BA, 4v6e:BA, 4v7b:BA, 4v7s:BA, 4v7t:BA, 4v7u:BA, 4v7v:BA, 4v9o:AA, 4v9o:CA, 4v9o:EA, 4v9o:GA, 4v9p:AA, 4v9p:CA, 4v9p:EA, 4v9p:GA, 4www:RA
63 5aka:B 2841 58 0.9828 0.0201 0.9828 1.48e-23 2j28:B, 6o9j:B, 4v4h:BB, 4v4h:DB, 4v4q:BB, 4v4q:DB, 4v50:BB, 4v50:DB, 4v52:BB, 4v52:DB, 4v53:BB, 4v53:DB, 4v54:BB, 4v54:DB, 4v55:BB, 4v55:DB, 4v56:BB, 4v56:DB, 4v57:BB, 4v57:DB, 4v5b:AB, 4v5b:CB, 4v5y:BB, 4v5y:DB, 4v64:BB, 4v64:DB, 4v6c:DA, 4v6d:DA, 4v6e:DA, 4v7s:DA, 4v7t:DA, 4v7u:DA, 4v7v:DA, 4www:YA
64 5afi:A 2900 58 0.9828 0.0197 0.9828 1.48e-23 7cpj:A, 6gxo:A, 3j9y:A, 5o2r:A, 8rpy:A, 8rpz:A, 8rq0:A, 8rq2:A
65 5ady:B 2903 58 0.9828 0.0196 0.9828 1.48e-23 4csu:B, 7d6z:A, 7d80:A, 8g2u:B, 8g31:B, 8g34:B, 8g38:B, 3jbu:b, 3jbv:b, 3jcd:A, 3jce:A, 5lzb:A, 5lzc:A, 5lzd:A, 7n2c:23, 7nso:A, 7nsp:A, 7nsq:A, 8peg:7, 6szs:A, 8t5d:B, 8t5h:B, 7ug7:23, 4v5h:BB, 4v65:BB, 4v66:BB, 4v69:BB, 4v6t:BA, 4v6y:BA, 4v6z:BA, 4v70:BA, 4v71:BA, 4v72:BA, 4v73:BA, 4v74:BA, 4v75:BA, 4v76:BA, 4v77:BA, 4v78:BA, 4v79:BA, 4v7a:BA, 4v7i:A8, 7zta:23S1
66 7ac7:1 2903 58 0.9828 0.0196 0.9828 1.48e-23 7acj:1, 7acr:1, 7m5d:1, 5mdv:1, 5mdw:1, 5mdy:1, 5mdz:1, 7nwt:1, 7nww:1, 7oif:1, 7oig:1, 7oii:1, 6om6:1, 6ore:1, 6orl:1, 6osk:1, 6osq:1, 6ost:1, 6ot3:1, 7ot5:1, 6ouo:1, 6q97:1, 6q98:1, 6q9a:1, 7sa4:1
67 7abz:1 2904 58 0.9828 0.0196 0.9828 1.48e-23 6c4i:A, 5iqr:1, 5u4i:A, 8w51:A
68 8a3l:a 2903 58 0.9828 0.0196 0.9828 1.48e-23
69 4v7c:BA 2897 52 0.8793 0.0176 0.9808 3.19e-20 4v7d:AA
70 3j0d:A 50 50 0.8448 0.9800 0.9800 4.13e-19
71 7yla:I 2876 58 0.9138 0.0184 0.9138 8.94e-16

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417