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BioLiP
>rna
gccaagctttttaacagtggccttattaaatgacttctccgctaatac

The query sequence (length=48) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8yeo:T 48 48 1.0000 1.0000 1.0000 8.61e-20
2 8yb6:C 61 35 0.7292 0.5738 1.0000 1.45e-12 8yha:C
3 8ydb:C 60 34 0.7083 0.5667 1.0000 5.22e-12 8yeo:C, 8yh9:C
4 8w1p:R 61 34 0.7083 0.5574 1.0000 5.22e-12
5 8ydb:T 32 32 0.6667 1.0000 1.0000 6.75e-11
6 8fcj:M 63 30 0.6250 0.4762 1.0000 8.74e-10 8fcu:M, 8fd2:M, 8fd3:M, 8ff4:M, 8ff5:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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