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BioLiP
>rna
gacuuaaugucacgguacccaauuuucugccccggacucca

The query sequence (length=41) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7y82:B 41 41 1.0000 1.0000 1.0000 5.14e-16
2 8d97:C 42 38 0.9268 0.9048 1.0000 2.39e-14
3 7y8t:D 37 36 0.8780 0.9730 1.0000 3.09e-13 7y8y:D
4 8d9e:C 36 36 0.8780 1.0000 1.0000 3.09e-13 8d9g:C, 8d9h:C, 7y81:B, 7y83:B, 7y85:B
5 7xso:D 35 35 0.8537 1.0000 1.0000 1.11e-12 7xsp:D, 7y80:B, 7y84:B
6 7x7r:C 36 35 0.8537 0.9722 1.0000 1.11e-12
7 8d8n:C 35 35 0.8537 1.0000 1.0000 1.11e-12 8d9i:C
8 7xsq:D 34 34 0.8293 1.0000 1.0000 4.00e-12 7xsr:D, 7xss:D, 7xt4:r
9 8d9f:C 33 33 0.8049 1.0000 1.0000 1.44e-11 8gu6:C, 7x7a:C, 7x8a:C
10 8gna:C 32 32 0.7805 1.0000 1.0000 5.18e-11
11 7xc7:C 31 31 0.7561 1.0000 1.0000 1.86e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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