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BioLiP
>rna
gacuuaaugucacgguacccaauuuucugccccgga

The query sequence (length=36) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7y8t:D 37 36 1.0000 0.9730 1.0000 2.56e-13 7y8y:D
2 7y82:B 41 36 1.0000 0.8780 1.0000 2.56e-13
3 8d9e:C 36 36 1.0000 1.0000 1.0000 2.56e-13 8d9g:C, 8d9h:C, 7y81:B, 7y83:B, 7y85:B
4 7xso:D 35 35 0.9722 1.0000 1.0000 9.21e-13 7xsp:D, 7y80:B, 7y84:B
5 7x7r:C 36 35 0.9722 0.9722 1.0000 9.21e-13
6 8d8n:C 35 35 0.9722 1.0000 1.0000 9.21e-13 8d9i:C
7 7xsq:D 34 34 0.9444 1.0000 1.0000 3.31e-12 7xsr:D, 7xss:D, 7xt4:r
8 8d9f:C 33 33 0.9167 1.0000 1.0000 1.19e-11 8gu6:C, 7x7a:C, 7x8a:C
9 8d97:C 42 33 0.9167 0.7857 1.0000 1.19e-11
10 8gna:C 32 32 0.8889 1.0000 1.0000 4.29e-11
11 7xc7:C 31 31 0.8611 1.0000 1.0000 1.54e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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