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BioLiP
>rna
gaaucucuuugaaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcucauacacauuuuuuggcagg
acgggaagaggagacgucgcgacccucgcacgagucguucuugacuuggucgcuugauguuucuucuucccguuc

The query sequence (length=155) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5nrl:2 155 155 1.0000 1.0000 1.0000 1.28e-78
2 6g90:2 143 144 0.9226 1.0000 0.9931 2.78e-70
3 7oqb:2 143 144 0.9097 0.9860 0.9792 2.17e-66 7oqe:2
4 5zwo:H 150 156 0.9613 0.9933 0.9551 2.80e-65
5 7dco:H 169 145 0.8968 0.8225 0.9586 2.18e-61
6 5lj3:Z 171 153 0.8710 0.7895 0.8824 1.73e-42 5lj5:Z
7 5zwm:H 206 92 0.5677 0.4272 0.9565 8.13e-36
8 5zwm:H 206 65 0.4000 0.3010 0.9538 1.78e-22
9 5mq0:2 155 144 0.8000 0.8000 0.8611 3.78e-34
10 6bk8:2 135 77 0.4710 0.5407 0.9481 1.77e-27
11 6j6h:L 209 69 0.4129 0.3062 0.9275 2.31e-21
12 6exn:2 136 49 0.3097 0.3529 0.9796 1.80e-17
13 6exn:2 136 28 0.1806 0.2059 1.0000 5.07e-08
14 5lqw:2 81 44 0.2839 0.5432 1.0000 6.46e-17
15 6j6q:L 210 56 0.3290 0.2429 0.9107 1.40e-13
16 5gm6:L 66 37 0.2387 0.5606 1.0000 5.03e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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