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BioLiP
>rna
cucuguugguucucugugcucugugcucuguuuaccaggucagguccgaaaggaagcagccaaggcagagacgcagagca
ggcagauguagcuggc

The query sequence (length=96) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xkv:B 96 96 1.0000 1.0000 1.0000 4.58e-46
2 2j28:8 74 74 0.7708 1.0000 1.0000 7.77e-34
3 1dul:B 49 46 0.4792 0.9388 1.0000 2.86e-18 1hq1:B, 3lqx:B
4 2pxe:B 49 42 0.4375 0.8571 1.0000 4.78e-16
5 2pxu:B 49 41 0.4271 0.8367 1.0000 1.72e-15
6 2pxt:B 49 45 0.4583 0.8980 0.9778 1.72e-15
7 2pxq:B 49 41 0.4271 0.8367 1.0000 1.72e-15
8 2pxp:B 49 41 0.4271 0.8367 1.0000 1.72e-15
9 2pxd:B 49 41 0.4271 0.8367 1.0000 1.72e-15
10 2pxb:B 49 41 0.4271 0.8367 1.0000 1.72e-15
11 2pxv:B 49 39 0.4062 0.7959 1.0000 2.22e-14
12 2pxl:B 47 39 0.4062 0.8298 1.0000 2.22e-14
13 2pxk:B 49 39 0.4062 0.7959 1.0000 2.22e-14
14 2pxf:B 49 39 0.4062 0.7959 1.0000 2.22e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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