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BioLiP
>rna
cuccgaacgguaagagccuagcauguagaaugaugucauacuuaucc

The query sequence (length=47) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8i0p:G 63 47 1.0000 0.7460 1.0000 3.00e-19
2 7abi:Z 57 47 1.0000 0.8246 1.0000 3.00e-19
3 7abg:Z 47 47 1.0000 1.0000 1.0000 3.00e-19
4 8qo9:Z 46 46 0.9574 0.9783 0.9783 1.80e-16
5 9fmd:IN 42 38 0.8085 0.9048 1.0000 3.02e-14 6qdv:I
6 8i0s:G 72 51 1.0000 0.6528 0.9216 1.08e-13 8i0t:G
7 8i0r:G 71 51 1.0000 0.6620 0.9216 1.08e-13
8 5z56:G 77 30 0.6383 0.3896 1.0000 8.45e-10 5z57:G, 5z58:G
9 5yzg:G 88 30 0.6383 0.3409 1.0000 8.45e-10
10 5xjc:G 84 30 0.6383 0.3571 1.0000 8.45e-10
11 8q7n:Z 31 30 0.6383 0.9677 1.0000 8.45e-10
12 6icz:G 84 30 0.6383 0.3571 1.0000 8.45e-10
13 8i0u:G 79 30 0.6383 0.3797 1.0000 8.45e-10 8i0v:G
14 8ch6:g 76 30 0.6383 0.3947 1.0000 8.45e-10 7qtt:g
15 6ahd:G 77 30 0.6383 0.3896 1.0000 8.45e-10
16 7aav:Z 29 29 0.6170 1.0000 1.0000 3.04e-09 7abf:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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