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BioLiP
>rna
cuaagaaauucacggcgggcuugauguccgcgucuaccugguucacugccguguaggc

The query sequence (length=58) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6uvn:M 61 58 1.0000 0.9508 1.0000 3.17e-25
2 7eqg:M 58 58 1.0000 1.0000 1.0000 3.17e-25 6ne0:M, 7yhs:M
3 6b44:M 60 58 1.0000 0.9667 1.0000 3.17e-25 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7elm:T, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M
4 5uz9:M 60 58 0.9828 0.9500 0.9828 1.48e-23 6vqv:L, 6vqx:K
5 7jzw:M 61 58 0.9655 0.9180 0.9655 6.86e-22 7jzx:M, 7jzy:M, 7jzz:M, 7t3j:M, 7t3k:M, 7t3k:m, 7t3l:M, 7t3l:m, 7taw:M, 7taw:m, 7tax:M
6 7ecw:M 44 44 0.7586 1.0000 1.0000 1.92e-17
7 6vqw:K 40 40 0.6897 1.0000 1.0000 3.22e-15
8 6lnb:M 60 52 0.8276 0.8000 0.9231 3.22e-15 6lnc:M
9 5xlo:K 38 38 0.6552 1.0000 1.0000 4.16e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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