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BioLiP
>rna
cuaagaaauucacggcgggcuugauguccgcgucuaccugauucacugccguauaggcagc

The query sequence (length=61) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7jzw:M 61 61 1.0000 1.0000 1.0000 7.33e-27 7jzx:M, 7jzy:M, 7jzz:M, 7t3j:M, 7t3k:M, 7t3k:m, 7t3l:M, 7t3l:m, 7taw:M, 7taw:m, 7tax:M
2 5uz9:M 60 60 0.9672 0.9833 0.9833 1.23e-24 6vqv:L, 6vqx:K
3 6uvn:M 61 61 0.9672 0.9672 0.9672 1.59e-23
4 6b44:M 60 60 0.9508 0.9667 0.9667 5.70e-23 6b45:M, 6b46:M, 6b47:M, 6b48:M, 7ecv:M, 7elm:J, 7elm:T, 7eln:J, 7eln:T, 6w1x:M, 7we6:J, 7we6:T, 6whi:M
5 7eqg:M 58 58 0.9180 0.9655 0.9655 7.38e-22 6ne0:M, 7yhs:M
6 7ecw:M 44 44 0.7049 0.9773 0.9773 9.61e-16
7 6vqw:K 40 40 0.6557 1.0000 1.0000 3.46e-15
8 5xlo:K 38 38 0.6230 1.0000 1.0000 4.47e-14
9 6lnb:M 60 46 0.6885 0.7000 0.9130 7.48e-12 6lnc:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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