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BioLiP
>rna
cgaggugguggaauugguagacacgcuaccuugaggugguagugccccuuacggguucaagucccguccucg

The query sequence (length=72) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2nr0:F 72 72 1.0000 1.0000 1.0000 6.92e-33
2 4wsm:2L 80 72 0.9861 0.8875 0.9861 3.22e-31
3 4wsm:2K 79 72 0.9722 0.8861 0.9722 5.39e-29
4 4wsm:3K 77 72 0.9583 0.8961 0.9583 9.01e-27
5 2nr0:G 67 68 0.9167 0.9851 0.9706 9.01e-27
6 2nr0:E 81 79 1.0000 0.8889 0.9114 7.02e-23
7 6ha8:x 75 72 0.9306 0.8933 0.9306 7.02e-23
8 6d90:3 87 79 1.0000 0.8276 0.9114 7.02e-23 6d9j:3, 6ha1:x, 6htq:v, 5kcr:1x, 7nso:8, 7nsp:8, 7nsq:8, 4v87:BB, 4v87:CB, 4v8b:AB, 4v8c:CB, 4v8c:DB, 4wsm:1K, 4wsm:1L
9 2nr0:H 65 71 0.8750 0.9692 0.8873 9.14e-17
10 2nre:F 56 28 0.3889 0.5000 1.0000 1.99e-08

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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