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BioLiP
>rna
ccugugaggaacuacugucuucacgcagaaagcgucuagccauggcguuaguaugagugucgugcagccuccaggacccc
cccucccgggagagccauaguggucugcggaaccggugaguacaccggaaugauuugggcgugcccccgcaagacugcua
gccgaguaguguugggucgcgaaaggccuugugguacugccugauagggugcuugcgagugccccgggaggucucguaga
ccgugcaccaugagcacgaau

The query sequence (length=261) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ujc:AC 261 261 1.0000 1.0000 1.0000 2.71e-137 4ujd:BC
2 5flx:z 264 261 1.0000 0.9886 1.0000 2.71e-137 7syq:z
3 7syv:z 258 258 0.9885 1.0000 1.0000 1.26e-135
4 7syp:z 249 249 0.9540 1.0000 1.0000 1.27e-130
5 5a2q:3 257 247 0.9272 0.9416 0.9798 1.66e-119
6 7syr:z 188 185 0.7088 0.9840 1.0000 4.79e-95 7sys:z, 7syt:z, 7syu:z, 7syw:z, 7syx:z
7 7syo:z 166 166 0.6360 1.0000 1.0000 1.75e-84
8 7syg:z 162 162 0.6207 1.0000 1.0000 2.93e-82 7syh:z, 7syi:z, 7syj:z, 7syk:z, 7syl:z, 7sym:z, 7syn:z
9 5oa3:3 186 175 0.6513 0.9140 0.9714 1.76e-79
10 6ip6:zz 163 163 0.6015 0.9632 0.9632 3.84e-71 6ip8:zz

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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