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BioLiP
>rna
cagaguguagcuuaacacaaagcacccaacuuacacuuaggagauuucaacuuaacuugaccgcucugacca

The query sequence (length=72) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8any:B 72 72 1.0000 1.0000 1.0000 6.92e-33 7odr:B, 7ods:B, 7odt:B, 8oir:B9, 8oit:B9, 8pk0:B, 7po4:B, 7qi4:B, 7qi5:B, 7qi6:B, 8qsj:B, 6zm5:B, 6zm6:B
2 7pd3:B 64 69 0.8889 1.0000 0.9275 3.27e-21
3 6i9r:B 60 49 0.6667 0.8000 0.9796 7.07e-18 7o9k:B, 7o9m:B
4 7og4:XB 59 49 0.6528 0.7966 0.9592 3.29e-16 6zs9:XB, 6zsa:XB, 6zsb:XB, 6zsc:XB, 6zsd:XB, 6zse:XB, 6zsg:XB
5 3j7y:B 57 50 0.6250 0.7895 0.9000 1.19e-10
6 7a5f:B3 56 49 0.6111 0.7857 0.8980 4.28e-10 7a5g:B3, 7a5h:B, 7a5i:B3, 7a5j:B, 7a5k:B3, 3j9m:B, 8k2a:L2, 8k2b:L2, 7l08:B, 7l20:B, 6nu2:B, 6nu3:B, 7of0:B, 7of2:B, 7of3:B, 7of4:B, 7of5:B, 7of6:B, 7of7:B, 7oi6:B, 7oi7:B, 7oi8:B, 7oi9:B, 7oia:B, 7oib:B, 7oic:B, 7oid:B, 7oie:B, 5ool:B, 5oom:B, 7qh6:B, 7qh7:B, 8qu1:B, 8qu5:B, 6vlz:B, 6vmi:B, 8xt0:L2, 8xt1:L2, 8xt2:L2, 8xt3:L2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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