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BioLiP
>rna
auugaaaguucaaagcuuagauacccuggagggaaaccagacuuaac

The query sequence (length=47) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6s91:V 48 47 1.0000 0.9792 1.0000 3.00e-19 6sh8:V, 6sic:V
2 6s8e:V 47 47 1.0000 1.0000 1.0000 3.00e-19
3 6s8b:V 49 47 1.0000 0.9592 1.0000 3.00e-19 6shb:V
4 6s6b:V 51 47 1.0000 0.9216 1.0000 3.00e-19
5 6s8e:U 44 44 0.9362 1.0000 1.0000 1.39e-17
6 6sic:U 42 39 0.8298 0.9286 1.0000 8.39e-15
7 6shb:U 43 39 0.8298 0.9070 1.0000 8.39e-15
8 6s8b:U 44 39 0.8298 0.8864 1.0000 8.39e-15
9 6s91:U 36 32 0.6809 0.8889 1.0000 6.53e-11
10 6sh8:U 32 29 0.6170 0.9062 1.0000 3.04e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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