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BioLiP
>rna
agcuuugcgcaguggcaguaucguagccaaugaggucuauccgaggcgcgauuauugcuaauu

The query sequence (length=63) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8r09:4 128 63 1.0000 0.4922 1.0000 5.79e-28 8r0b:4
2 8qpe:4 63 63 1.0000 1.0000 1.0000 5.79e-28
3 8qoz:4 80 63 1.0000 0.7875 1.0000 5.79e-28 8qpb:4
4 8h6k:4A 128 63 1.0000 0.4922 1.0000 5.79e-28 8h6l:4A
5 6ahd:I 136 63 1.0000 0.4632 1.0000 5.79e-28 8qzs:4
6 8rm5:4 110 62 0.9841 0.5636 1.0000 2.08e-27
7 8qpa:4 62 62 0.9841 1.0000 1.0000 2.08e-27
8 8qo9:4 127 62 0.9841 0.4882 1.0000 2.08e-27
9 5o9z:4 137 63 0.9841 0.4526 0.9841 2.69e-26
10 8q7n:4 76 62 0.9683 0.8026 0.9839 9.68e-26
11 8h6j:4A 125 63 0.9841 0.4960 0.9841 9.68e-26
12 8qxd:4 124 63 0.9683 0.4919 0.9683 4.50e-24 8r08:4, 8r0a:4
13 8qp8:4 76 63 0.9683 0.8026 0.9683 4.50e-24 8qp9:4, 8qpk:4
14 8h6e:4A 125 63 0.9683 0.4880 0.9683 4.50e-24
15 6qw6:4 125 63 0.9524 0.4800 0.9524 2.10e-22 6qx9:4
16 6ah0:I 117 53 0.8095 0.4359 0.9623 1.63e-18

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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