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BioLiP
>rna
aacuugaaaaaguggcaccgagucggugcu

The query sequence (length=30) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7z4g:A 91 30 1.0000 0.3297 1.0000 3.79e-10
2 8ygj:B 136 30 1.0000 0.2206 1.0000 3.79e-10
3 8ye9:C 90 30 1.0000 0.3333 1.0000 3.79e-10
4 8ye6:C 92 30 1.0000 0.3261 1.0000 3.79e-10 7z4h:A
5 5y36:B 99 30 1.0000 0.3030 1.0000 3.79e-10
6 8wus:B 115 30 1.0000 0.2609 1.0000 3.79e-10
7 7v59:C 115 30 1.0000 0.2609 1.0000 3.79e-10 7v59:G
8 8t78:B 89 30 1.0000 0.3371 1.0000 3.79e-10
9 8t77:B 89 30 1.0000 0.3371 1.0000 3.79e-10 8t79:B
10 8t6y:B 88 30 1.0000 0.3409 1.0000 3.79e-10
11 8t6t:B 95 30 1.0000 0.3158 1.0000 3.79e-10
12 8t6s:B 90 30 1.0000 0.3333 1.0000 3.79e-10 7z4c:A
13 8t6p:B 88 30 1.0000 0.3409 1.0000 3.79e-10 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
14 7s4v:B 98 30 1.0000 0.3061 1.0000 3.79e-10 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
15 7s4u:B 97 30 1.0000 0.3093 1.0000 3.79e-10
16 7s3h:R 30 30 1.0000 1.0000 1.0000 3.79e-10
17 7s38:R 87 30 1.0000 0.3448 1.0000 3.79e-10
18 7s37:R 46 30 1.0000 0.6522 1.0000 3.79e-10
19 7s36:R 87 30 1.0000 0.3448 1.0000 3.79e-10 8t6o:B
20 4oo8:B 97 30 1.0000 0.3093 1.0000 3.79e-10 4oo8:E
21 6o0z:B 96 30 1.0000 0.3125 1.0000 3.79e-10 8t6x:B, 7z4i:A, 7z4l:A
22 6o0x:B 98 30 1.0000 0.3061 1.0000 3.79e-10 6o0y:B
23 8kal:E 95 30 1.0000 0.3158 1.0000 3.79e-10
24 8kak:A 94 30 1.0000 0.3191 1.0000 3.79e-10 8kak:E, 8kal:A, 8kam:A
25 8kah:I 63 30 1.0000 0.4762 1.0000 3.79e-10 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
26 8kag:A 98 30 1.0000 0.3061 1.0000 3.79e-10
27 6ifo:D 90 30 1.0000 0.3333 1.0000 3.79e-10
28 6ifo:C 88 30 1.0000 0.3409 1.0000 3.79e-10 5xbl:B
29 8g1i:B 98 30 1.0000 0.3061 1.0000 3.79e-10
30 8fzt:B 69 30 1.0000 0.4348 1.0000 3.79e-10
31 5f9r:A 116 30 1.0000 0.2586 1.0000 3.79e-10 6mcb:B, 6mcc:B, 5vzl:B
32 6aeb:A 95 30 1.0000 0.3158 1.0000 3.79e-10 6aeb:E, 6aeg:A
33 8wuv:B 126 29 0.9667 0.2302 1.0000 1.36e-09
34 8wuu:B 111 29 0.9667 0.2613 1.0000 1.36e-09
35 8wut:B 112 29 0.9667 0.2589 1.0000 1.36e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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