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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YTLPDPLVGADGTRVHDRATWQHRRRPELLQLFAREVYGRTPLGRPEGMVFKVTTMEHAALGGAATRKEVTVRFGRDPNA
PSMQLLLYVPNAVIARAERAPVFLGLNFYGNHTVHTDPAIALSARWIPAEAPNGANHRATEAARGSDAQKWPVEQILARG
YAVATVYCGDLCPDRPDGLNASVASWLDAAAGDQRAPDAWGAIGVWAWGLSRALDYLETDPLVDASRVAVHGHSRLGKAA
LWAGAQDDRFALVISNESGCGGAALSKRIHGETVARINTVFPHWFARNFRRYDDHEEALPVDQHELLALVAPRPLYVASA
EDDDWADPRGEFLAVKAAEPVFRLFGQTGPSGEDVPRVNEPSGGALRYHIRPGPAGMTAQDWAFYLAFADEWLKSALP

The query sequence (length=398) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6syu:A 402 398 0.9975 0.9876 0.9975 0.0 6grw:A, 6gs0:A, 6syr:A, 6syv:A, 6sz0:A, 6sz4:A, 6t0e:A, 6t0e:B, 6t0i:A
2 7b7h:A 370 394 0.9221 0.9919 0.9315 0.0 6szo:A
3 8qcl:A 390 396 0.4447 0.4538 0.4470 2.00e-115 8qcl:B, 8qef:B
4 8tru:A 378 159 0.1457 0.1534 0.3648 1.61e-21
5 8tru:A 378 40 0.0377 0.0397 0.3750 0.006
6 6ru1:B 386 163 0.1508 0.1554 0.3681 9.47e-20 6ru2:A, 6ru2:B, 6rv7:B, 6rv8:B, 6rv8:A, 6rv9:B
7 4g4j:A 369 158 0.1432 0.1545 0.3608 9.43e-18
8 6rax:4 626 85 0.0678 0.0431 0.3176 0.20 6raw:4, 6ray:4, 6raz:4
9 6aid:A 261 43 0.0477 0.0728 0.4419 1.4 3wyn:A, 3wyn:B
10 8rd8:MB 119 74 0.0553 0.1849 0.2973 2.6 8rdv:MB, 8rdw:MB
11 2wfk:A 255 69 0.0503 0.0784 0.2899 3.6 3frl:A, 3frl:B, 2wfk:B, 2wfk:C, 2wfk:D, 2wfk:E
12 6nff:A 794 93 0.0729 0.0365 0.3118 5.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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