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BioLiP
>protein
YSWIEKVLEMGLQDSRKRFILYVASRYLVNVKGVNEDEALQTLKEFYYKLQSGKVYESWLKSVINGVKKKGLLPWSLKRI
EERDKEMYNEIIRVLKNS

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5of3:C 107 98 1.0000 0.9159 1.0000 4.00e-66 5of3:F
2 1h1l:B 519 53 0.1429 0.0270 0.2642 0.14 1h1l:D, 1qgu:B, 1qgu:D, 1qh1:B, 1qh1:D, 1qh8:B, 1qh8:D
3 7k36:I 599 86 0.2551 0.0417 0.2907 0.64
4 4mbb:A 184 20 0.0918 0.0489 0.4500 2.1 4nyh:A, 4nyh:B, 4nyh:C
5 3ckl:B 296 61 0.2245 0.0743 0.3607 2.3 3ckl:A, 2z5f:A, 2z5f:B
6 2x0q:A 582 61 0.1939 0.0326 0.3115 2.9 2x0p:A
7 4dzt:A 276 17 0.0816 0.0290 0.4706 3.1
8 8r3g:A 335 25 0.1122 0.0328 0.4400 6.0 3bxf:A, 3bxg:A, 3bxg:B, 3bxh:A, 3bxh:B, 2okg:B, 7oyk:BBB, 7oyk:AAA, 7oyk:CCC, 7oyk:DDD, 8r3g:B, 8r3g:D, 8r3g:C
9 2zyo:A 385 55 0.1531 0.0390 0.2727 6.9 2zyk:A, 2zyk:B, 2zyk:C, 2zyk:D, 2zym:A, 2zyn:A
10 4nnr:A 102 67 0.1939 0.1863 0.2836 9.1 4nnr:B
11 5k1b:A 264 55 0.1531 0.0568 0.2727 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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