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BioLiP
>protein
YRLGDVDFNGIIDGRDATAVLTEYARISTGKPAEFVGNTALAADVNKDNMIDAADATHILTYYAISSTRDDITSDDYFAL
HQPL

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ajy:B 84 84 1.0000 1.0000 1.0000 9.05e-57 8ajy:D
2 4iu2:B 238 95 0.4405 0.1555 0.3895 3.78e-07 4iu3:B, 4wkz:A
3 4iu2:B 238 29 0.1667 0.0588 0.4828 0.11 4iu3:B, 4wkz:A
4 4iu2:B 238 28 0.1310 0.0462 0.3929 3.5 4iu3:B, 4wkz:A
5 8umj:A 443 66 0.2619 0.0497 0.3333 0.031 8umj:B, 8umk:A, 8umk:B, 8uml:A, 8uml:B, 8umm:A, 8umm:B, 8umn:A, 8umn:B
6 6lpv:A 434 28 0.1190 0.0230 0.3571 0.38
7 4dh2:B 72 60 0.2024 0.2361 0.2833 0.61 4dh2:D
8 2l4h:A 184 67 0.1548 0.0707 0.1940 0.66 2l4i:A, 2lm5:A, 6ocx:D, 6ocx:C, 6ocx:A, 6ocx:B, 6od0:A, 6od0:B, 1xo5:A, 1xo5:B, 1y1a:A, 1y1a:B
9 8x3a:A 151 62 0.2381 0.1325 0.3226 0.79 8x39:A, 8x39:B
10 4fl4:A 68 65 0.2619 0.3235 0.3385 1.7 4fl4:D, 4fl4:G, 4fl4:J
11 6sjx:A 182 53 0.2500 0.1154 0.3962 2.1 6sjw:A
12 6kg9:A 67 62 0.1905 0.2388 0.2581 4.2 6kgc:B, 6kgd:B, 6kge:D, 6kge:B, 6kgf:D, 6kgf:B
13 7cdw:A 683 30 0.1548 0.0190 0.4333 6.2 7cdw:B
14 5egf:B 443 38 0.1548 0.0293 0.3421 6.3 5egf:A, 5egf:D, 5ejd:B, 5ejd:D, 5ejd:F, 5ejd:H, 5ejd:J, 5ejd:L, 5ejd:N, 5ejd:P
15 7o9j:B 307 37 0.1429 0.0391 0.3243 6.4 7o9j:A, 7o9l:A, 7o9l:B, 7odz:A, 7odz:B, 8ohy:A
16 7pua:DF 594 58 0.2500 0.0354 0.3621 7.3 6hiv:DF, 6hiw:DF, 6hiz:DF, 7pub:DF, 6sg9:DF, 6sgb:DF
17 4lrj:A 160 24 0.1071 0.0563 0.3750 7.8 4lrj:B
18 8ova:AR 89 26 0.1190 0.1124 0.3846 8.0
19 4v3p:ST 82 24 0.1310 0.1341 0.4583 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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