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BioLiP
>protein
YRKVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQ

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q0a:R 96 71 1.0000 0.7396 1.0000 1.20e-48 7dgq:I, 7dgr:I, 7dgs:I, 7dgz:I, 7dh0:I, 7dkf:I2, 5lnk:b, 5o31:R, 8q0f:R, 8q0j:R, 8q0m:R, 8q0o:R, 8q0q:R, 8q1p:R, 8q1u:R, 8q1y:R, 8q25:R, 8q45:R, 8q46:R, 8q47:R, 8q48:R, 8q49:R, 8q4a:R, 6q9d:S6, 6qa9:S6, 6qbx:S6, 6qc2:S6, 6qc3:S6, 6qc4:S6, 6qc5:S6, 6qc6:S6, 6qc7:S6, 6qc8:S6, 7qsd:R, 7qsk:R, 7qsl:R, 7qsm:R, 7qsn:R, 7qso:R, 7r41:R, 7r42:R, 7r43:R, 7r44:R, 7r45:R, 7r46:R, 7r47:R, 7r48:R, 7r4c:R, 7r4d:R, 7r4f:R, 7r4g:R, 8ud1:1R, 8ueo:1R, 8uep:1R, 8ueq:1R, 8uer:1R, 8ues:1R, 8uet:1R, 8ueu:1R, 8uev:1R, 8uew:1R, 8uex:1R, 8uey:1R, 8uez:1R, 8ugh:1R, 8ugi:1R, 8ugj:1R, 8ugn:1R, 8ugn:5R, 8ugr:1R, 8ugr:5R, 7v2c:T, 7v2d:T, 7v2e:T, 7v2f:T, 7v2h:T, 7v2k:T, 7v2r:T, 7v30:T, 7v31:T, 7v32:T, 7v33:T, 7v3m:T, 7vb7:T, 7vbn:T, 7vbz:T, 7vwj:T, 7vxp:T, 7vxu:T, 7vy8:T, 7vya:T, 7vyf:T, 7vyh:T, 7vyn:T, 7vz1:T, 7vzv:T, 7vzw:T, 7w00:T, 7w0h:T, 7w0r:T, 7w0y:T, 7w1o:T, 7w1p:T, 7w1t:T, 7w1u:T, 7w1v:T, 7w1z:T, 7w20:T, 7w2k:T, 7w2l:T, 7w2r:T, 7w2u:T, 7w2y:T, 7w31:T, 7w32:T, 7w35:T, 7w4c:T, 7w4d:T, 7w4e:T, 7w4f:T, 7w4g:T, 7w4j:T, 7w4k:T, 7w4l:T, 7w4m:T, 7w4n:T, 7w4q:T, 7zd6:b, 7zdh:b, 7zdj:b, 7zdm:b, 7zdp:b, 7zeb:b, 6zk9:b, 6zkc:b, 6zkd:b, 6zke:b, 6zkf:b, 6zkg:b, 6zkh:b, 6zki:b, 6zkj:b, 6zkk:b, 6zkl:b, 6zkm:b, 6zkn:b, 6zko:b, 6zkp:b, 6zkq:b, 6zkr:b, 6zks:b, 6zkt:b, 6zku:b, 6zkv:b
2 7b93:R 96 71 0.8451 0.6250 0.8451 1.29e-42 7ak5:R, 7ak6:R, 8c2s:R, 8ca3:R, 6g2j:R, 6g72:R, 8iao:R, 8iap:R, 8ib4:R, 8ib5:R, 8ib9:R, 8iba:R, 8ibd:R, 8ibe:R, 8ic2:R, 8ic3:R, 8olt:R, 8om1:R, 7psa:R, 8pw5:7, 8pw6:7, 8pw7:7, 8rgp:7, 8rgq:7, 8rgr:7, 8rgt:7, 6zr2:R, 6ztq:R
3 8esw:S6 90 69 0.5493 0.4333 0.5652 3.67e-22 8b9z:R, 8ba0:R, 8esz:S6
4 5lc5:R 89 35 0.4930 0.3933 1.0000 1.80e-20 5ldw:R, 5ldx:R
5 7zm7:M 118 52 0.4085 0.2458 0.5577 8.21e-10 7zmb:M, 7zmg:M
6 7b0n:R 118 57 0.3380 0.2034 0.4211 9.22e-09 6gcs:M, 7o6y:M, 7o71:M, 6rfr:M, 6rfs:M, 6y79:M, 6yj4:R
7 8gym:s6 92 55 0.3521 0.2717 0.4545 6.16e-08 8b6f:BR, 8bqs:BR, 8gym:S6, 7tgh:S6
8 8bed:R 73 55 0.3099 0.3014 0.4000 1.27e-07 7a23:P, 7a24:P, 7aqr:R, 7ar7:R, 7ar8:R, 7arb:R, 8bpx:R, 8bq5:R, 8bq6:R, 8e73:S6, 6x89:S6
9 8qby:R 59 49 0.2535 0.3051 0.3673 7.02e-06
10 2ib8:D 393 36 0.1690 0.0305 0.3333 0.067 2f2s:A, 2f2s:B, 2f2s:C, 2f2s:D, 2ib8:A, 2ib8:B, 2ib8:C, 2ib9:A, 2ib9:B, 2ib9:C, 2ib9:D, 2ibu:A, 2ibu:B, 2ibu:C, 2ibu:D, 2ibw:A, 2ibw:B, 2ibw:C, 2ibw:D, 2iby:A, 2iby:B, 2iby:C, 2iby:D
11 7cw5:B 394 36 0.1831 0.0330 0.3611 0.070 7cw5:A
12 2jz8:A 87 44 0.1549 0.1264 0.2500 0.095
13 6bn2:A 393 36 0.1690 0.0305 0.3333 0.54
14 6aqp:C 399 65 0.2535 0.0451 0.2769 0.62 6aqp:A, 6aqp:B, 6aqp:D, 6are:A, 6are:B, 6are:C, 6are:D
15 5f38:D 394 36 0.1972 0.0355 0.3889 1.1 5f38:B, 5f38:C
16 4o9c:C 393 53 0.2254 0.0407 0.3019 1.4
17 4ubt:A 396 36 0.1831 0.0328 0.3611 1.9 4ubt:B, 4ubt:C, 4ubt:D, 4ubu:A, 4ubu:B, 4ubu:C, 4ubu:D, 4ubu:E, 4ubu:F, 4ubu:G, 4ubu:H, 4ubv:A, 4ubv:B
18 6bja:A 382 36 0.1690 0.0314 0.3333 2.0
19 4c2j:D 395 36 0.1972 0.0354 0.3889 2.5 4c2j:A, 4c2j:B, 4c2j:C
20 6yra:B 579 45 0.2254 0.0276 0.3556 2.9 6yra:D
21 7pkt:y 71 22 0.1268 0.1268 0.4091 3.1
22 8gqm:A 377 38 0.2254 0.0424 0.4211 3.1
23 7o4t:D 403 36 0.1690 0.0298 0.3333 3.3 4b3i:C, 4b3j:C, 4b3j:D, 7o1i:D, 7o1l:D, 7o4r:C, 7o4r:D, 7o4s:C, 7o4s:D, 7o4t:C, 8opu:C, 8opu:D, 8opx:C, 8opx:D, 8opy:D, 8oql:C, 8oql:D, 8oqm:D, 8oqo:C, 8oqo:D, 8oqp:C, 8oqp:D, 8oqs:C, 8oqs:D, 8pf8:C, 8pf8:D
24 3r5r:A 109 28 0.1690 0.1101 0.4286 3.4 3r5r:B, 3r5r:C, 3r5r:D, 3r5r:E, 3r5w:A, 3r5w:M, 3r5w:B, 3r5w:N, 3r5w:C, 3r5w:K, 3r5w:D, 3r5w:L, 3r5w:E, 3r5w:O
25 1gec:E 216 28 0.1831 0.0602 0.4643 4.4
26 1meg:A 216 28 0.1831 0.0602 0.4643 5.5
27 1djg:B 561 59 0.2113 0.0267 0.2542 5.9 1djg:A, 1djh:A, 1djh:B, 1dji:A, 1dji:B, 1djw:A, 1djw:B, 1djx:A, 1djx:B, 1djy:A, 1djy:B, 1djz:A, 1djz:B
28 4jej:A 241 38 0.1831 0.0539 0.3421 6.2
29 4xl4:A 392 36 0.1831 0.0332 0.3611 7.5 4xl4:B
30 6bap:A 505 42 0.2394 0.0337 0.4048 8.1 6baf:A, 6bak:A, 6bao:A, 6bao:B, 6bap:B, 6bap:C, 6bay:A, 6bay:B, 6bay:C, 4rq9:A
31 8iab:A 704 53 0.2535 0.0256 0.3396 8.6 8iab:B, 8iad:A, 8iad:B, 7xa9:A, 7xa9:B
32 6bjb:A 384 36 0.1549 0.0286 0.3056 8.9 6bjb:B
33 5ess:A 551 50 0.1972 0.0254 0.2800 9.2 5esd:A, 5esd:B, 5esd:C, 5esd:D, 5eso:D, 5eso:B, 5eso:C, 5ess:B, 5ess:C, 5ess:D, 5esu:A, 5esu:B, 5esu:C, 5esu:D, 6o04:A, 6o04:D, 6o04:B, 6o04:C, 6o0g:A, 6o0g:D, 6o0g:C, 6o0j:A, 6o0j:D, 6o0j:B, 6o0j:C, 6o0n:A, 6o0n:B
34 1wl4:A 394 38 0.1972 0.0355 0.3684 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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