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BioLiP
>protein
YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7coh:H 75 75 1.0000 1.0000 1.0000 3.50e-54 7coh:U, 8h8r:H, 8h8r:U, 8h8s:H, 8h8s:U
2 8c8q:J 75 75 0.4933 0.4933 0.4933 1.80e-22
3 4byf:A 698 26 0.1600 0.0172 0.4615 0.96 4byf:C
4 3g5w:A 318 18 0.1067 0.0252 0.4444 1.6 3g5w:B, 3g5w:C, 3g5w:D, 3g5w:E, 3g5w:F
5 6o0e:A 799 38 0.1467 0.0138 0.2895 4.2
6 8d6s:A 818 38 0.1467 0.0134 0.2895 4.2 8d6s:B, 8d6t:B, 8d6t:A, 8d6u:A, 8d6u:B, 6o0e:B, 6o0f:A, 6o0f:B
7 2yeq:A 522 18 0.1200 0.0172 0.5000 5.0 2yeq:B
8 4amw:A 1025 38 0.1733 0.0127 0.3421 5.8 4amw:B, 4amw:C, 4amw:D, 4amx:A, 4amx:B, 4amx:C, 4amx:D, 2x2i:A, 2x2i:B, 2x2i:C, 2x2i:D, 2x2j:A, 2x2j:B, 2x2j:C, 2x2j:D
9 8oq6:A 336 12 0.1200 0.0268 0.7500 6.7 8op9:A, 8op9:B, 8op9:E, 8op9:C, 8op9:D, 8oq6:B, 8oq6:C, 8oq6:D, 8oq6:E, 8oq7:A, 8oq7:B, 8oq7:C, 8oq7:D, 8oq7:E, 8oq8:A, 8oq8:E, 8oqa:A, 8oqa:B, 8oqa:C, 8oqa:D, 8oqa:E, 8rh4:A, 8rh4:E, 8rh4:B, 8rh4:C, 8rh4:D, 8rh7:E, 8rh7:D, 8rh7:A, 8rh7:B, 8rh7:C, 8rh8:A, 8rh8:B, 8rh8:E, 8rh8:C, 8rh8:D, 8rh9:B, 8rhg:A, 8rhg:E, 8rhg:B, 8rhg:C, 8rhg:D
10 7uhy:C 578 19 0.1200 0.0156 0.4737 6.8
11 3lli:A 251 34 0.1733 0.0518 0.3824 7.6 3llk:A, 3llk:B, 3llk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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