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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLP
ETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQ
IRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKLP
EGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASA
GIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAE

The query sequence (length=393) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v8l:C 396 393 1.0000 0.9924 1.0000 0.0 7arh:C, 7arj:C, 7arl:C, 7arm:C, 7mdx:A
2 7arh:E 409 410 0.2774 0.2665 0.2659 7.93e-36 7arl:E, 7mdx:B, 7v8l:E
3 5lil:A 615 393 0.2061 0.1317 0.2061 0.037 5lil:B, 5lj6:A, 5lj7:B
4 8bzx:B 568 160 0.0992 0.0687 0.2437 1.1
5 5ws4:A 650 44 0.0356 0.0215 0.3182 1.7 5ws4:B
6 7w78:B 344 99 0.0687 0.0785 0.2727 2.1 7w7a:B, 7w7a:D, 7w7a:F, 7w7a:H, 7w7b:B, 7w7b:D, 7w7b:F, 7w7b:H, 7w7d:B, 7w7d:D, 7w7d:F, 7w7d:H
7 6nts:B 361 71 0.0534 0.0582 0.2958 4.3
8 7oqh:D 364 44 0.0356 0.0385 0.3182 4.3 7oqh:A, 7oqh:B, 7oqh:C, 7oqh:E, 7oqh:F
9 7dic:A 646 47 0.0458 0.0279 0.3830 4.4 7dcy:A, 7did:A, 7dol:A
10 5lj7:A 592 385 0.1985 0.1318 0.2026 6.3
11 8jwu:C 412 32 0.0356 0.0340 0.4375 6.9 8jwj:A, 8jwj:C, 8jws:A, 8jws:B, 8jws:C, 8jwu:A, 8jwu:B
12 6zj3:Ln 133 37 0.0254 0.0752 0.2703 8.0
13 3o6o:A 209 44 0.0382 0.0718 0.3409 8.0 3o6o:B, 3omu:A, 3omu:B, 3opd:A, 3opd:B, 3opd:C
14 7qde:B 169 23 0.0254 0.0592 0.4348 8.5 7qdd:B
15 8veq:A 325 101 0.0712 0.0862 0.2772 9.8 6vbd:A, 8ven:A, 8vep:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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