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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YPANYAKAPRFKALIYYTQHAEEAHVQFAEQATTFFKKLNYGDGFVLDITTDFSKYPYEKLKEYNVIIMLNTSPNTKAER
DAFEQYMENGGGWVGFHAAAYNDKNTHWPWFVKFLGGGVFYCNNWPPQPVLVEVDNEEHPVTKNLPASFVAPASEWYQWT
PSPRQNKDVEVLLSLSPKNYPLGIKDVVNFGDFPIVWSNKNYRMIYLNMGHGDEEFIDGTQNLLLVNAFRWVVSKDKSGN
PFLK

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4pxy:A 244 244 1.0000 1.0000 1.0000 0.0 4pxy:B
2 4nna:A 498 92 0.0984 0.0482 0.2609 0.12 4nnb:A, 4nnc:A
3 4e5v:A 280 152 0.1475 0.1286 0.2368 0.58 4e5v:B
4 5zxb:B 241 24 0.0410 0.0415 0.4167 1.9 5zxb:A
5 4nwv:A 355 31 0.0574 0.0394 0.4516 2.4 4nwv:C, 4nwv:B, 4nww:A, 4nww:B, 4nww:C
6 6lla:B 363 113 0.1148 0.0771 0.2478 3.1 6lk2:A, 6lk2:B, 6lk2:C, 6lk2:D, 6lla:A, 6lla:C, 6lla:D
7 5hnv:A 283 85 0.0779 0.0671 0.2235 3.1 5x1q:A, 5x1s:A, 5x1t:A
8 1si8:A 474 61 0.0656 0.0338 0.2623 3.6 1si8:B, 1si8:C, 1si8:D
9 7r3e:A 545 57 0.0574 0.0257 0.2456 5.0 8b4a:A, 8b4a:B, 8b4a:C, 8b4a:D, 3dh8:A, 8dq0:C, 8dq0:D, 8dq1:C, 8dq1:D, 5hio:A, 5hip:A, 5hiq:A, 5his:A, 7kgw:A, 7kgx:A, 2q0i:A, 2q0j:A, 2q0j:B, 7r3e:B, 7r3f:A, 7r3j:A, 7r3j:B, 7r3j:C, 7r3j:D, 7tz9:A, 7tza:A, 7u6g:A, 2vw8:A
10 7svt:B 141 56 0.0779 0.1348 0.3393 5.6
11 8bgw:A 750 46 0.0574 0.0187 0.3043 5.7 8bgw:B, 6qq5:A, 6qq5:B, 6qq6:A, 6qq6:B, 6t6v:A
12 7b6b:A 346 88 0.0984 0.0694 0.2727 7.7 7b6b:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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