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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YIKPTKVNKNENGVVIDDKTVLAGSTNYYELTWDLDQYKNDRSSADTIQKGFYYVDDYPEEALELRQDLVKITDANGNEV
TGVSVDNYTSLEAAPQEIRDVLSKAGIRPKGAFQIFRADNPREFYDTYVKTGIDLKIVSPMVVKKQMGQTGGSYENQAYQ
IDFGNGYASNIVINNVPKINPKKDVTLTLDPADTNNVDGQTIPLNTVFNYRLIGGIIPANHSEELFEYNFYDDYDQTGDH
YTGQYKVFAKVDIILKNGVIIKSGTELTQYTTAEVDTTKGAITIKFKEAFLRSVSIDSAFQAESYIQMKRIAVGTFENTY
INTVNGVTYSSNTVKTTT

The query sequence (length=338) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6e3f:A 497 331 0.9172 0.6237 0.9366 0.0 3opu:A, 3opu:B, 3opu:C, 3opu:D, 3opu:E, 3opu:F, 3qe5:A, 3qe5:B
2 4tsh:B 485 331 0.9024 0.6289 0.9215 0.0
3 7l0o:A 479 331 0.6213 0.4384 0.6344 8.43e-155 7l0o:B, 2woy:A, 2wqs:A, 2wza:A
4 4ofq:A 337 339 0.3609 0.3620 0.3599 7.46e-59 4ofq:B
5 8beg:A 650 345 0.3077 0.1600 0.3014 3.02e-33 8beg:B
6 8beg:A 650 212 0.2012 0.1046 0.3208 2.04e-14 8beg:B
7 3cuf:A 314 115 0.0917 0.0987 0.2696 0.030 3cug:A, 3cuh:A, 3cui:A, 3cuj:A, 1exp:A, 1fh7:A, 1fh8:A, 1fh9:A, 1fhd:A, 2his:A, 1j01:A, 2xyl:A
8 7xpi:A 363 95 0.0740 0.0689 0.2632 1.8 7ytl:A
9 7jil:F 176 63 0.0562 0.1080 0.3016 3.8
10 2fty:A 532 87 0.0651 0.0414 0.2529 5.1 2fty:B, 2fty:C, 2fty:D, 2fvk:A, 2fvk:B, 2fvk:C, 2fvk:D, 2fvm:A, 2fvm:B, 2fvm:C, 2fvm:D
11 6za2:B 1083 51 0.0503 0.0157 0.3333 5.1 6za2:A
12 5b6p:B 145 55 0.0562 0.1310 0.3455 5.4 5b6p:C, 5b6p:G, 5ydb:A, 5ydb:B, 5ydb:C, 5ydb:D
13 5d2e:A 485 34 0.0266 0.0186 0.2647 5.5
14 5bqm:C 443 81 0.0621 0.0474 0.2593 6.2 5bqm:A, 2fpq:A
15 1v47:A 346 61 0.0503 0.0491 0.2787 7.1 1v47:B
16 3c9f:B 540 54 0.0533 0.0333 0.3333 8.5 3c9f:A
17 2qyj:A 154 45 0.0562 0.1234 0.4222 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218