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BioLiP
>protein
YGPKGPKGPKGKPGPDGDPGDPGDPGPKGPKG

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5yan:A 32 32 1.0000 1.0000 1.0000 6.66e-12
2 3r75:B 622 13 0.3125 0.0161 0.7692 3.1 3r75:A, 3r76:A, 3r76:B
3 7ena:3 295 15 0.2500 0.0271 0.5333 3.5 6o9l:4, 6o9m:4
4 7ena:3 295 23 0.3750 0.0407 0.5217 5.2 6o9l:4, 6o9m:4
5 8x15:I 792 18 0.2500 0.0101 0.4444 8.0
6 8x19:I 864 18 0.2500 0.0093 0.4444 8.0 8x1c:I
7 8k1l:A 979 12 0.2188 0.0072 0.5833 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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