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BioLiP
>protein
YGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFKEEPKEMTLDEWKAIQN

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v6w:Ah 58 58 1.0000 1.0000 1.0000 3.30e-37
2 4v6x:Ah 73 16 0.2586 0.2055 0.9375 7.66e-04 6z6n:CD
3 7ls1:A 61 12 0.1724 0.1639 0.8333 0.47 7ls2:A, 6mte:w, 7oyd:w, 8q87:S, 8xsx:CD, 8y0w:S, 8y0x:S, 6z6m:CD
4 7oyc:i2 51 18 0.1724 0.1961 0.5556 0.57
5 1qha:A 903 25 0.1724 0.0111 0.4000 3.9 1bg3:A, 1bg3:B, 1cza:N, 1dgk:N, 4f9o:A, 4f9o:B, 4foe:A, 4foe:B, 4foi:A, 4foi:B, 4fpa:A, 4fpa:B, 4fpb:A, 4fpb:B, 1hkb:A, 1hkb:B, 1hkc:A, 1qha:B
6 6qj3:A 980 18 0.1379 0.0082 0.4444 6.5 6qj4:A
7 3drw:A 460 56 0.2586 0.0326 0.2679 8.3 3drw:B
8 4aq0:A 765 28 0.1724 0.0131 0.3571 8.4 4aq0:B, 2xsg:A, 2xsg:B
9 7oik:A 4426 26 0.1897 0.0025 0.4231 9.2 7oim:A, 6tax:A, 6tay:A
10 3tm9:A 146 31 0.1897 0.0753 0.3548 9.3 3tld:A, 3tld:B, 3tm3:A, 1vhb:A, 1vhb:B, 2vhb:A, 2vhb:B, 3vhb:A, 3vhb:B, 4vhb:A, 4vhb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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