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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YFDSHLHSEGLGFSELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGIHPRCIPPDY
EFVLGYLEEGEWVAFGEIGLELVTDEEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILESLDFPADLAVIDHV
NFETLDMVLETEYWIGLTVQDAARIVAEHGERFMLNSDAGYRVAEAAVKIEEAVGREEMEKVARENARKFLRV

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3guw:A 233 233 1.0000 1.0000 1.0000 1.74e-173 3guw:B, 3guw:C, 3guw:D
2 1zzm:A 259 78 0.1159 0.1042 0.3462 5.50e-05
3 2y1h:B 265 94 0.1116 0.0981 0.2766 0.010 2y1h:A
4 1yix:A 265 225 0.2275 0.2000 0.2356 0.32 1yix:B
5 6i5s:A 445 152 0.1631 0.0854 0.2500 0.52
6 7po9:A 88 32 0.0515 0.1364 0.3750 0.52 7po9:B
7 7c86:A 296 88 0.0944 0.0743 0.2500 2.2 6csn:A, 6cso:A, 7e6x:A, 7e6y:A, 7e6z:A, 7e70:A, 7e71:A, 3ug9:A, 4yzi:A
8 5myj:BP 134 50 0.0730 0.1269 0.3400 2.8
9 5vkw:B 469 28 0.0515 0.0256 0.4286 3.8
10 6k0b:C 231 24 0.0472 0.0476 0.4583 6.5 6k0a:D, 6k0b:D
11 4wtr:A 266 59 0.0687 0.0602 0.2712 6.7 4wts:A
12 4o30:A 217 30 0.0515 0.0553 0.4000 6.8 4o30:B, 5va6:A, 5va6:B, 5vac:A, 5vah:A, 5vah:B, 5vbc:A, 5vbc:B
13 3if2:A 437 88 0.1030 0.0549 0.2727 8.4 3if2:B
14 7sbw:B 1196 41 0.0558 0.0109 0.3171 9.4 6nzk:A, 6nzk:B, 6nzk:C, 7sb3:J, 7sb3:A, 7sb3:B, 7sb4:A, 7sb4:C, 7sb4:B, 7sbv:J, 7sbv:A, 7sbv:B, 7sbw:J, 7sbw:A, 7sbx:J, 7sbx:B, 7sbx:A, 7sby:J, 7sby:A, 7sby:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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