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BioLiP
>protein
YAFKIPLSIRQKICSSLDAPNSRGNDWRLLAQKLSMDRYLNYFATKASPTGVILDLWEARQQDGDLNSLASALEEMGKSE
MLVAMATD

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1wmg:C 88 88 1.0000 1.0000 1.0000 9.74e-62 1wmg:D, 1wmg:E
2 4bvq:A 364 38 0.1818 0.0440 0.4211 0.11 4bvq:B, 4bvr:A, 4bvr:B, 4bvs:A, 4bvs:B, 4bvt:A, 4bvt:B
3 3c8v:C 465 31 0.1364 0.0258 0.3871 1.6
4 3kfl:A 530 54 0.1591 0.0264 0.2593 2.0 6swx:A
5 4eg7:B 536 65 0.1818 0.0299 0.2462 3.6 6cml:A, 6cml:B, 4eg1:A, 4eg1:B, 4eg3:A, 4eg3:B, 4eg4:A, 4eg5:A, 4eg6:A, 4eg7:A, 4eg8:A, 4eg8:B, 4ega:A, 4ega:B, 5j58:A, 5j58:B, 5j59:A, 5j59:B, 5j5a:A, 5j5a:B, 6mes:A, 6mes:B, 4mvw:A, 4mvw:B, 4mvx:A, 4mvx:B, 4mvy:A, 4mvy:B, 4mw0:A, 4mw0:B, 4mw1:A, 4mw1:B, 4mw2:A, 4mw2:B, 4mw4:A, 4mw4:B, 4mw5:A, 4mw5:B, 4mw6:A, 4mw6:B, 4mw7:A, 4mw7:B, 4mw9:A, 4mw9:B, 4mwb:A, 4mwb:B, 4mwc:A, 4mwc:B, 4mwd:A, 4mwd:B, 4mwe:A, 4mwe:B, 5nfh:A, 5nfh:B, 5tqu:A, 5v49:A, 5v49:B, 4zt2:A, 4zt2:B, 4zt3:A, 4zt3:B, 4zt4:A, 4zt4:B, 4zt5:A, 4zt5:B, 4zt6:A, 4zt6:B, 4zt7:A, 4zt7:B
6 4eg6:B 515 65 0.1818 0.0311 0.2462 3.8 4eg4:B, 4eg5:B, 5tqu:B
7 1fwx:A 591 36 0.1477 0.0220 0.3611 5.3 1fwx:B, 1fwx:C, 1fwx:D, 2iwf:A, 2iwf:B, 2iwk:A, 2iwk:B
8 8iab:A 704 55 0.1591 0.0199 0.2545 5.5 8iab:B, 8iad:A, 8iad:B, 7xa9:A, 7xa9:B
9 7szv:A 372 25 0.1364 0.0323 0.4800 7.9 7szv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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