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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
WTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKGPMLKIIVNSFKNMVNTFVPSGKVMQMVDQKLPDLLG
QFSGPYEEEMKGIADVTEIPLGEIISFNIFYELFTMATSIITEDKKGHLLHVRNMDFGIFLGWNINNNTWVITEELKPLT
VNLDFQRNSKTVFKATSFAGYVGMLTGFKPGQFSLTLNERFSMNGGYLGLLEWILGKKDASWIGFITRSVLENATSYEEA
KNILAKTKLLAPAYFILGGNQSGEGCVITRERKDSLDIYELDPKQGRWYVVQTNYDRWKNPLFLDDRRTPAQTCLKRTTQ
ESLSFATLYDILSTKPVLNKLTVFTALMDVTKNHYEAYLRDCPDPCVGW

The query sequence (length=369) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5u81:A 369 369 1.0000 1.0000 1.0000 0.0
2 5u84:B 353 366 0.7967 0.8329 0.8033 0.0 5u84:A
3 6mhm:B 253 253 0.5691 0.8300 0.8300 1.22e-164 6mhm:D
4 6dy2:B 232 246 0.2439 0.3879 0.3659 7.89e-49 6dy2:D
5 6dy0:B 231 235 0.2466 0.3939 0.3872 2.85e-47 6dxz:B
6 6dxx:B 231 245 0.2412 0.3853 0.3633 1.50e-44 6dxx:D, 6dxx:F
7 6dxz:A 95 94 0.0596 0.2316 0.2340 0.17 6dy0:A, 6dy1:A
8 8g3b:E 334 29 0.0379 0.0419 0.4828 0.19 8g3f:E
9 5h3r:A 141 63 0.0379 0.0993 0.2222 2.7 5h3r:B
10 5h81:B 354 64 0.0542 0.0565 0.3125 3.4 5h81:A, 5h82:A, 5h82:B
11 7uqx:A 583 45 0.0379 0.0240 0.3111 4.8 7uqy:A
12 6koz:A 436 81 0.0623 0.0528 0.2840 7.4 6a8z:A, 6a8z:B, 6iff:A, 6iff:B, 6ifg:A, 6ifg:B, 6koy:A, 6koy:B, 6koz:B, 6kp0:A, 6kp0:B, 6kp1:A, 6kp1:B
13 3q08:A 241 49 0.0434 0.0664 0.3265 7.7 3q08:B, 3q08:C, 3q08:D, 3q08:E, 3q08:F, 3q08:G, 3q08:H, 3q08:I, 3q08:J, 3q08:K, 3q08:L, 3q08:M, 3q08:N, 3q08:O, 3q08:P, 3q08:Q, 3q08:R, 3q08:S, 3q08:T, 3q09:A, 3q09:B, 3q09:C, 3q09:D, 3q09:E, 3q09:F, 3q09:G, 3q09:H, 3q09:I, 3q09:J, 3q09:K, 3q09:L, 3q09:M, 3q09:N, 3q09:O, 3q09:P, 3q09:Q, 3q09:R, 3q09:S, 3q09:T, 2vxh:A, 2vxh:B, 2vxh:C, 2vxh:D, 2vxh:E, 2vxh:F
14 7orm:A 2145 55 0.0434 0.0075 0.2909 8.3
15 7wrr:A 650 61 0.0434 0.0246 0.2623 8.3 7wrr:B, 7wrr:C, 7wrr:D, 7wrt:A, 7wrt:B, 7wrt:C, 7wrt:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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