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BioLiP
>protein
WSPTVGIIMVIANVIAITFGRQTIKYPSAEPALPSAKFFGGFGAPALLATTAFGHILGVGLVLGLH

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6k61:k 78 66 1.0000 0.8462 1.0000 1.02e-41 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
2 6tcl:K 60 66 0.7879 0.8667 0.7879 1.33e-27 6tcl:KK
3 6kif:K 78 65 0.5758 0.4872 0.5846 3.97e-24 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
4 6vpv:K 78 65 0.5455 0.4615 0.5538 5.95e-22 6vpv:k, 6vpv:9
5 8asp:k 77 65 0.5152 0.4416 0.5231 5.35e-19 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
6 7fix:K1 79 68 0.4848 0.4051 0.4706 1.80e-15 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
7 7y7b:K 78 65 0.4545 0.3846 0.4615 3.02e-14 7y8a:K
8 4l6v:K 80 67 0.5000 0.4125 0.4925 2.57e-12 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
9 8wm6:K 69 65 0.4242 0.4058 0.4308 7.26e-12 8wmj:K, 8wmv:K, 8wmw:K
10 7y5e:KN 70 58 0.4242 0.4000 0.4828 7.07e-11 7y5e:K2, 7y7a:K7, 7y7a:Ko
11 8wey:K 63 62 0.3939 0.4127 0.4194 2.37e-09
12 7s3d:K 75 65 0.4848 0.4267 0.4923 4.26e-09 7s3d:T, 7s3d:k
13 4kt0:K 53 65 0.4394 0.5472 0.4462 2.65e-08
14 7m75:K 47 56 0.3485 0.4894 0.4107 2.02e-06 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
15 6kmx:aK 46 54 0.3182 0.4565 0.3889 7.44e-06 6kmx:bK, 6kmx:cK
16 5zgb:K 59 62 0.3485 0.3898 0.3710 4.29e-04 7blz:K, 6fos:K, 5zgh:K
17 7qco:K 65 58 0.2727 0.2769 0.3103 4.48e-04 7qco:R, 7qco:r, 7qco:k
18 7a4p:K 86 76 0.3939 0.3023 0.3421 0.010 6zzx:K, 6zzy:K
19 8htu:K 81 26 0.2273 0.1852 0.5769 0.016 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
20 6igz:K 80 26 0.2121 0.1750 0.5385 0.047
21 8bcv:K 88 43 0.2727 0.2045 0.4186 0.079 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
22 8j7a:K 56 35 0.2727 0.3214 0.5143 0.12
23 8cmo:K 89 26 0.2424 0.1798 0.6154 0.15
24 8wgh:K 83 26 0.2273 0.1807 0.5769 0.19
25 4xk8:k 46 28 0.2273 0.3261 0.5357 0.30 4xk8:K
26 7wfd:AK 65 60 0.3182 0.3231 0.3500 0.37 7wfe:BK, 7wg5:AK, 7wg5:BK
27 7dr2:aK 69 59 0.3182 0.3043 0.3559 0.43 7dr0:K, 7dr2:cK
28 8j6z:K 84 26 0.2121 0.1667 0.5385 0.69 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
29 3mpi:C 395 27 0.1818 0.0304 0.4444 1.1 3mpi:A, 3mpi:B, 3mpi:D, 3mpj:B, 3mpj:A, 3mpj:D, 3mpj:E, 3mpj:F, 3mpj:G
30 4y28:K 57 19 0.1818 0.2105 0.6316 1.7
31 3u0k:A 397 30 0.1667 0.0277 0.3667 1.9
32 7dz7:K 86 26 0.2273 0.1744 0.5769 2.0 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
33 7qgk:A 217 30 0.1667 0.0507 0.3667 2.6
34 7nm8:AAA 251 42 0.2424 0.0637 0.3810 3.0
35 8ddr:A 968 31 0.1818 0.0124 0.3871 3.5 8ddq:A, 8ddq:B, 8ddq:C, 8ddq:D, 8ddr:B, 8ddr:C, 8ddr:D, 8dds:A, 8dds:B, 8dds:C, 8dds:D, 8ddt:A, 8ddt:B, 8ddt:C, 8ddt:D, 8ddu:A, 8ddu:B, 8ddu:C, 8ddu:D, 8ddv:A, 8ddv:B, 8ddv:C, 8ddv:D, 8ddx:A, 8ddx:B, 8ddx:C, 8ed7:A, 8ed7:B, 8ed7:C, 8ed7:D, 8ed8:A, 8ed8:B, 8ed8:C, 8ed8:D, 8ed9:A, 8ed9:B, 8ed9:C, 8ed9:D
36 8ddx:D 992 31 0.1818 0.0121 0.3871 3.5
37 7r76:A 1834 21 0.1515 0.0055 0.4762 3.8 7r77:A
38 7r78:A 1880 21 0.1515 0.0053 0.4762 3.8
39 9fek:G 377 41 0.2576 0.0451 0.4146 5.2 9fek:A, 9fek:B, 9fek:C, 9fek:D, 9fek:E, 9fek:F, 9fek:H, 9fek:I, 9fek:J, 9fek:K, 9fek:L
40 6jo5:K 45 19 0.1970 0.2889 0.6842 6.0 8h2u:K, 6jo6:K
41 7bj9:B 230 27 0.1818 0.0522 0.4444 6.2 7bj9:A, 5ew0:A, 5ew0:B, 8hxn:A, 3q6v:A, 3q6v:B, 3sd9:A, 3sd9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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