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BioLiP
>protein
WLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLE
PYLKEVIRERKEREEWAKK

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dgq:A2 106 99 0.9899 0.9245 0.9899 1.94e-68 2a06:F, 2a06:S, 1pp9:F, 1pp9:S, 1ppj:F, 1ppj:S
2 8c81:C 561 19 0.1010 0.0178 0.5263 0.86 8c80:C, 8c82:C, 8c82:G, 8iaj:B, 8iaj:F, 8iak:B, 8iak:F, 8iam:B, 8iam:F, 8qof:C, 8qof:G, 8qog:C
3 8b64:M 304 23 0.1010 0.0329 0.4348 4.8 7yml:M
4 5naq:A 461 38 0.1212 0.0260 0.3158 5.2 5naq:B, 5naq:C, 5naq:D, 5naq:E, 5naq:F
5 5ktk:A 452 34 0.0909 0.0199 0.2647 5.3
6 5tkm:A 184 28 0.1111 0.0598 0.3929 7.5 5tkm:B
7 6pvg:A 445 33 0.1111 0.0247 0.3333 9.0 6pvf:A, 6pvh:A, 6pvi:A, 6pvj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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