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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VYGVMAEFPTPEALIEATRKAKAAGYTKMDAFSPFPIEEVIEEIAHGDTGVPRLVLLFGLIGAASGFILQYIGNLVDYPL
NVGGRPLDITNWPAMIPITFESGILLASFAAAIGMIVLNGLPSPYHPVFNVPRFQYASQDAFFLCIEATDPLFDRSRTSQ
FLRSLNPMQVSEVAY

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8k9e:D 175 175 1.0000 1.0000 1.0000 6.89e-128 8k9f:D, 8x2j:D
2 6loe:D 174 173 0.5200 0.5230 0.5260 6.21e-55
3 7v1v:A 447 61 0.1029 0.0403 0.2951 4.9 7v1v:F, 7v1v:B, 7v1v:E, 7v1v:C, 7v1v:D, 7v1w:A, 7v1w:C, 7v1w:B, 7v1w:D, 7v1w:E, 7v1w:F, 7v1x:A, 7v1x:D, 7v1x:B, 7v1x:C, 7v1x:F, 7v1x:E
4 5c4i:A 394 80 0.1086 0.0482 0.2375 5.3 5c4i:D, 5exd:A, 5exd:D, 5exd:G, 5exd:J, 5exe:A, 5exe:D
5 3loo:B 341 32 0.0686 0.0352 0.3750 5.7 3loo:A, 3loo:C
6 6xhi:A 473 53 0.0914 0.0338 0.3019 6.1 4xcg:B, 6xhj:A
7 4xcd:A 507 53 0.0914 0.0316 0.3019 6.3 4xcd:B, 4xcd:C, 4xcd:D, 4xcd:E, 4xcd:F
8 4am2:A 159 22 0.0686 0.0755 0.5455 6.4 4am2:B, 4am4:A, 4am4:B, 4am5:A, 4am5:B
9 1d5a:A 733 32 0.0629 0.0150 0.3438 9.0
10 6gu2:A 294 84 0.1257 0.0748 0.2619 9.3 6gu3:A, 6gu4:A, 6gu6:A, 6gu7:A, 5hq0:A, 5lqf:A, 5lqf:D, 4y72:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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