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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLP
PQLGPRLG

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yez:H 93 88 1.0000 0.9462 1.0000 5.62e-59 7dkz:H, 5l8r:H, 3lw5:H, 4rku:H, 4y28:H, 6yac:H, 6zoo:H, 6zxs:H
2 4xk8:H 90 86 0.8864 0.8667 0.9070 6.59e-52 4xk8:h
3 7wfd:AH 95 86 0.8409 0.7789 0.8605 1.32e-50 8j6z:H, 8j7a:H, 8j7b:H, 2o01:H, 7wfe:BH, 7wg5:AH, 2wsc:H, 2wse:H, 2wsf:H
4 8htu:H 95 86 0.6250 0.5789 0.6395 1.14e-37 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
5 5zji:H 95 75 0.7500 0.6947 0.8800 1.52e-31 8bcv:H, 8bcw:H
6 8wgh:H 90 75 0.7045 0.6889 0.8267 4.04e-31
7 6zzx:H 94 85 0.4545 0.4255 0.4706 5.16e-21 6zzy:H
8 6sl5:H 92 81 0.3977 0.3804 0.4321 5.30e-14
9 7d0j:H 100 85 0.3636 0.3200 0.3765 5.58e-14 7dz7:H, 7dz8:H, 8h2u:H, 6ijo:H
10 7yca:H 96 87 0.4432 0.4062 0.4483 7.66e-13
11 6igz:H 88 86 0.4205 0.4205 0.4302 8.40e-13
12 6tq4:A 297 34 0.1591 0.0471 0.4118 0.34 6tq6:A
13 6tp3:A 314 34 0.1591 0.0446 0.4118 0.34 6to7:A, 6to7:B, 6tod:A, 6tod:B, 6tos:A, 6tos:B, 6tot:A, 6tot:B, 6tp3:B, 6tp4:A, 6tp4:B, 6tp6:A, 6tp6:B, 6tq4:B, 6tq6:B, 6tq7:A, 6tq7:B, 6tq9:A, 6tq9:B
14 7xrr:A 309 34 0.1591 0.0453 0.4118 0.36 7l1u:R, 7l1v:R, 7sqo:R, 7sr8:R
15 5why:A 418 64 0.2159 0.0455 0.2969 0.56
16 6v9s:A 503 33 0.1591 0.0278 0.4242 0.58 4zj8:A, 4zjc:A
17 6tpn:A 510 31 0.1477 0.0255 0.4194 0.80 4s0v:A, 6tpg:A, 6tpj:A, 6tpj:B, 5wqc:A, 5ws3:A
18 4x28:A 386 45 0.1932 0.0440 0.3778 4.3 4x28:B
19 5i4e:A 959 21 0.1250 0.0115 0.5238 4.7
20 7l0b:A 202 27 0.1250 0.0545 0.4074 5.2 7l0b:B, 7l0b:C, 7l0b:D
21 5t04:A 458 19 0.1023 0.0197 0.4737 5.5 4grv:A
22 5v1d:D 247 64 0.2045 0.0729 0.2812 6.4 5v1d:C
23 5v1d:A 193 90 0.3068 0.1399 0.3000 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417