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BioLiP
>protein
VSVESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELMTKLEKYDTDPFTTFDKL
HVQTT

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fma:C 86 85 1.0000 0.9884 1.0000 5.44e-59 3fma:A, 3fma:B, 3fma:D, 3fma:E
2 7ruq:A 63 59 0.2824 0.3810 0.4068 2.34e-10 7ruq:C
3 7rup:A 63 59 0.2471 0.3333 0.3559 8.97e-09
4 1l2z:A 62 30 0.1176 0.1613 0.3333 0.35
5 3kkj:A 328 18 0.1059 0.0274 0.5000 0.50 3kkj:B, 5krq:A, 5krq:B, 4zcc:A, 4zcc:B, 4zcc:C, 4zcc:D, 4zcd:A, 4zcd:B
6 1x87:A 495 37 0.1412 0.0242 0.3243 0.93 1x87:B
7 2fkn:B 546 37 0.1412 0.0220 0.3243 2.1 2fkn:A, 2fkn:C, 2fkn:D
8 5m1j:A6 539 32 0.1412 0.0223 0.3750 7.3
9 8q9v:A 543 38 0.1176 0.0184 0.2632 7.5 8q9u:A
10 3ne8:A 226 24 0.1059 0.0398 0.3750 8.4
11 3p27:B 444 32 0.1412 0.0270 0.3750 9.3 3p27:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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