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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VSSALFFQYNQAIKPPYQVLIDTNFINFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALKLARDPRIK
RLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPLMSVGGHAYVIEKLPDVF

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d5s:5K 175 143 1.0000 0.8171 1.0000 2.71e-105 7ajt:UX, 7aju:UX, 7d4i:5K, 7d5t:5K, 7d63:5K, 6ke6:5K, 6lqp:5K, 6lqq:5K, 6lqr:5K, 6lqs:5K, 6lqt:5K, 6lqu:5K, 6lqv:5K, 7suk:SL, 5wlc:SL, 5wyj:U4, 5wyk:U4, 6zqb:UX, 6zqc:UX, 6zqd:UX, 6zqe:UX, 6zqg:UX
2 7mq8:SL 192 141 0.6713 0.5000 0.6809 3.16e-72 7mq9:SL, 7mqa:SL
3 5yz4:A 133 131 0.6014 0.6466 0.6565 1.35e-63
4 5oql:P 190 138 0.5804 0.4368 0.6014 1.09e-61 5jpq:d, 6rxt:UX, 6rxu:UX, 6rxv:UX, 6rxx:UX, 6rxy:UX, 6rxz:UX
5 4mj7:A 157 145 0.2517 0.2293 0.2483 8.20e-08 4mj7:B
6 5ief:A 858 88 0.1608 0.0268 0.2614 0.18 5h9o:A, 5h9o:C, 5hjo:A, 5hjo:C, 5hjr:A, 5hjr:C, 5ied:A, 5iee:A, 5ieg:A, 7jty:A, 7jty:C, 7k9n:A, 7k9n:C, 7k9o:A, 7k9o:C, 7k9q:A, 7k9q:C, 7k9t:A, 7k9t:C, 7kad:A, 7kad:C, 7kb6:A, 7kb6:C, 7kb8:A, 7kb8:C, 7kbj:A, 7kbj:C, 7kbr:A, 7kbr:C, 7kry:A, 7kry:C
7 7mvz:A 1641 67 0.1259 0.0110 0.2687 3.4 7tbi:F1, 7tbi:F2, 7tbj:F1, 7tbj:F2, 7tbk:F1, 7tbk:F2, 7tbl:F1, 7tbl:F2, 7tbm:F1, 7tbm:F2
8 7k1r:A 536 23 0.0699 0.0187 0.4348 4.2 7k1r:B, 7k1r:C, 7k1r:D, 8uws:C, 8uws:D, 8uws:A, 8uws:B
9 3j79:F 390 82 0.1469 0.0538 0.2561 6.3 3jbn:AF, 3jbo:AF, 3jbp:AF, 8tpu:AF, 5umd:F
10 3zyy:X 628 55 0.0979 0.0223 0.2545 7.6 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
11 6ya7:B 107 48 0.1189 0.1589 0.3542 8.6 4f99:B, 4f9a:B, 4f9a:D, 4f9b:B, 4f9b:D, 4f9c:B, 6ya6:B, 6ya8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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