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BioLiP
>protein
VRTIRIYQPGEYQPGQLLELSPEAGQHVGVVLRMEQGEQLTLFNGDNKEFTASIERVKKKQVFVRIASVLEVNRESPLKI
HLAQAISKGERMEMVMQKSAELGVACITPLITERCQVKIDKEKMAKKMHQWLNIIIGACEQCGRNQIPELRQPVYLDQFV
REAKEHLKLILHPAFSKTWRDYPVQPPDVALIIGPEGGFSDEEIRLTSGHGFLPLSLGPRVLRTETAAITALSVLQAAGG
DL

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5o96:D 243 242 1.0000 0.9959 1.0000 0.0 5o96:A, 5o96:B, 5o96:C, 5o96:E, 5o96:F, 5o96:G, 5o96:H
2 5vm8:B 237 241 0.3595 0.3671 0.3610 3.38e-44
3 2egv:A 229 228 0.2810 0.2969 0.2982 3.04e-22 2egv:B, 2egw:A, 2egw:B
4 2cx8:A 225 217 0.2686 0.2889 0.2995 3.60e-22 2cx8:B, 2z0y:A, 2z0y:B
5 3kw2:A 240 232 0.2975 0.3000 0.3103 6.50e-19 3kw2:B
6 3ap2:A 300 119 0.1198 0.0967 0.2437 0.13 3ap1:A, 3ap1:B, 3ap2:B, 3ap3:A, 3ap3:B, 3ap3:C, 3ap3:D
7 4k7z:A 467 69 0.0744 0.0385 0.2609 1.1 4k8d:A, 1zk7:A, 1zx9:A
8 4v3p:Ls 262 52 0.0579 0.0534 0.2692 2.7 4v7e:Cq
9 6krn:A 456 57 0.0620 0.0329 0.2632 5.4
10 8ovj:SW 115 74 0.0950 0.2000 0.3108 6.2 6az1:W, 8rxh:SW, 8rxx:SW
11 1oao:C 729 63 0.0826 0.0274 0.3175 8.2 3git:A, 3git:B, 3git:C, 3git:D, 3git:E, 3git:F, 3i01:M, 3i01:N, 3i01:O, 3i01:P, 3i04:M, 3i04:N, 3i04:O, 3i04:P, 1mjg:M, 1mjg:N, 1mjg:O, 1mjg:P, 1oao:D, 6x5k:M, 6x5k:N, 6x5k:O, 6x5k:P, 2z8y:M, 2z8y:N, 2z8y:O, 2z8y:P
12 8xme:A 1176 54 0.0620 0.0128 0.2778 8.4 7eu0:A, 8xmb:A, 8xmc:A, 8xmd:A
13 7pxc:E 483 61 0.0702 0.0352 0.2787 8.4 7px9:A, 7px9:B, 7px9:C, 7px9:E, 7px9:F, 7pxb:A, 7pxb:B, 7pxb:C, 7pxb:E, 7pxb:F, 7pxc:B, 7pxc:C, 7pxc:F, 7pxc:A, 7pxd:B, 7pxd:C, 7pxd:E, 7pxd:F, 7pxd:A
14 8cja:B 731 43 0.0620 0.0205 0.3488 8.5 8cjb:B, 8cjc:B, 8cmw:B, 7nyp:A, 7nyp:B, 7nys:A, 7nys:B, 7nz5:A, 7nz5:B, 7o0d:A, 1ru3:A, 7zkj:B, 7zkk:B, 7zkv:B
15 7zjs:A 929 52 0.0579 0.0151 0.2692 9.3 8k4d:A, 6qnx:A, 7zjs:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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