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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFR
PERNESFDILAATQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGF
GVMHVNEKDEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEALRRDAADPTSSRDFGKDIIPYIVEHGKAVAHR
FADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDC
IISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDPELDAKRFRRTESGICLIT
QSMIDKLDL

The query sequence (length=409) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5w5r:A 415 412 1.0000 0.9855 0.9927 0.0 3brk:X, 5w5r:P, 5w5r:D, 5w5r:M, 5w5r:E, 5w5r:H, 5w5r:G, 5w5r:C, 5w5r:I, 5w5r:J, 5w5r:B, 5w5r:K, 5w5r:Q, 5w5r:F, 5w5r:T, 5w5r:U, 5w5t:A, 5w5t:B, 5w5t:C, 5w5t:D, 5w5t:E, 5w5t:F, 5w5t:G, 5w5t:H, 5w5t:I, 5w5t:J, 5w5t:K, 5w5t:L, 5w5t:M, 5w5t:N, 5w5t:O, 5w5t:P, 5w5t:Q, 5w5t:R, 5w5t:Z, 5w5t:T
2 6r8u:A 425 410 0.5746 0.5529 0.5732 2.13e-174 5l6s:C, 5l6s:G, 5l6s:I, 5l6s:L, 5l6v:A, 5l6v:E, 5l6v:G, 5l6v:H, 5l6v:J, 5l6v:K, 5l6v:N, 5l6v:B, 5l6v:C, 5l6v:D, 5l6v:F, 5l6v:L, 5l6v:M, 5l6v:O, 5l6v:P, 6r8b:D, 6r8b:B, 6r8b:A, 6r8b:C, 6r8u:B, 6r8u:D, 6r8u:C, 6shj:D, 6shj:A, 6shj:B, 6shj:C, 6shn:D, 6shn:C, 6shq:A, 6shq:D, 6shq:C, 6shq:B, 6si8:A, 6si8:B, 6si8:D, 6si8:C
3 5l6v:I 400 404 0.5550 0.5675 0.5619 2.84e-162
4 1yp3:C 435 419 0.3423 0.3218 0.3341 2.32e-57 1yp2:A, 1yp2:B, 1yp2:C, 1yp2:D, 1yp3:A, 1yp3:B, 1yp3:D, 1yp4:A, 1yp4:B, 1yp4:C
5 7d72:K 360 367 0.2078 0.2361 0.2316 6.07e-08 7d72:I, 7d72:E, 7d72:F, 7d72:G, 7d72:H, 7d72:J, 7d72:L, 7d73:E, 7d73:F, 7d73:G, 7d73:I, 7d73:J, 7d73:K, 7d73:L, 7d73:H, 7d74:E, 7d74:F, 7d74:G, 7d74:H, 7d74:I, 7d74:J, 7d74:K, 7d74:L
6 6jq8:A 225 258 0.1540 0.2800 0.2442 5.36e-07
7 7whs:A 366 371 0.2103 0.2350 0.2318 1.09e-06 7whs:B, 7whs:C, 7whs:D, 7whs:E, 7whs:F, 7wht:A, 7wht:B, 7wht:C, 7wht:D, 7wht:E, 7wht:F
8 7x8k:B 367 369 0.2127 0.2371 0.2358 2.83e-05 7x8k:A, 7x8k:D
9 2ggq:A 401 255 0.1418 0.1446 0.2275 0.007 5z09:A, 5z09:B, 5z09:C, 5z09:D
10 3hl3:A 246 200 0.1198 0.1992 0.2450 0.008 4ecm:A
11 6pd2:C 616 118 0.0782 0.0519 0.2712 0.014 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
12 4ho9:A 294 262 0.1345 0.1871 0.2099 0.23 4ho3:A, 4ho4:A, 4ho5:A, 4ho5:B, 4ho6:A, 4ho8:A, 4ho8:B, 4ho8:C, 4ho8:D, 4ho9:B, 4hoc:A, 4hoc:B
13 1wvc:A 254 63 0.0513 0.0827 0.3333 0.27 1tzf:A
14 4y7u:A 224 69 0.0465 0.0848 0.2754 0.88 4y7v:A
15 7pds:A 457 27 0.0318 0.0284 0.4815 2.7 7pds:B, 7pds:C, 7pds:D, 7pds:E, 7pds:F
16 1hm8:A 458 350 0.1785 0.1594 0.2086 3.6 4aaw:A, 4ac3:A, 1g97:A, 1hm8:B, 1hm9:A, 1hm9:B, 7kr9:A
17 1lvw:A 295 186 0.1198 0.1661 0.2634 3.8 1lvw:B, 1lvw:C, 1lvw:D
18 7aqq:z 233 169 0.0929 0.1631 0.2249 3.9 7a23:q, 7a23:p, 7a24:q, 7a24:p, 7ar7:z, 7ar8:z, 7arb:z, 8bef:z, 8bpx:z, 8bq5:z, 8bq6:z
19 4gwi:A 144 62 0.0440 0.1250 0.2903 4.5 4gwj:A, 3le0:A, 3leg:A, 3lei:A, 3lek:A
20 1g0o:C 281 104 0.0758 0.1103 0.2981 5.6 1doh:A, 1doh:B, 1g0n:A, 1g0n:B, 1g0o:A, 1g0o:B, 1g0o:D, 1ybv:A, 1ybv:B
21 4b2x:B 302 180 0.1002 0.1358 0.2278 5.8 4arw:A, 4arw:B, 4arw:C, 4arw:D, 4asj:A, 4asj:B, 4asj:C, 4asj:D, 4asy:A, 4asy:B, 4asy:C, 4asy:D, 4b2w:A, 4b2w:B, 4b2w:C, 4b2w:D, 4b2x:A, 4b2x:C, 4b2x:D, 4b3u:A, 4b3u:B, 4b3u:C, 4b3u:D, 4b42:A, 4b42:B, 4b42:C, 4b42:D, 4b4b:A, 4b4b:B, 4b4b:C, 4b4b:D, 4b4g:A, 4b4g:B, 4b4g:C, 4b4g:D, 4b4m:A, 4b4m:B, 4b4m:C, 4b4m:D, 4b5b:A, 4b5b:B, 4b5b:C, 4b5b:D, 5fts:A, 5fts:B, 5fts:C, 5fts:D, 5ftv:A, 5ftv:B, 5ftv:C, 5ftv:D, 5fu0:A, 5fu0:B, 5fu0:C, 5fu0:D, 5fu8:A, 5fu8:B, 5fu8:C, 5fu8:D, 5fuh:A, 5fuh:B, 5fuh:C, 5fuh:D, 1fxo:A, 1fxo:C, 1fxo:B, 1fxo:D, 1fxo:E, 1fxo:H, 1fxo:F, 1fxo:G, 5fye:A, 5fye:B, 5fye:C, 5fye:D, 1g0r:A, 1g0r:B, 1g0r:C, 1g0r:D, 1g0r:E, 1g0r:G, 1g0r:H, 1g1l:A, 1g1l:C, 1g1l:B, 1g1l:D, 1g1l:E, 1g1l:H, 1g1l:F, 1g1l:G, 1g23:A, 1g23:B, 1g23:C, 1g23:D, 1g23:E, 1g23:F, 1g23:G, 1g23:H, 1g2v:A, 1g2v:C, 1g2v:B, 1g2v:D, 1g2v:E, 1g2v:G, 1g2v:F, 1g2v:H, 1g3l:A, 1g3l:C, 1g3l:B, 1g3l:D, 6t37:A, 6t37:B, 6t37:C, 6t37:D, 6t38:A, 6t38:B, 6t38:C, 6t38:D, 6tqg:A, 6tqg:B, 6tqg:C, 6tqg:D, 3zlk:A, 3zlk:B, 3zlk:C, 3zlk:D, 3zll:A, 3zll:B, 3zll:C, 3zll:D
22 2gtl:D 140 60 0.0562 0.1643 0.3833 6.5 2gtl:H, 2gtl:L, 5m3l:D, 5m3l:H, 5m3l:L, 1x9f:D, 1x9f:H, 1x9f:L
23 6jly:E 414 60 0.0391 0.0386 0.2667 9.6 6jly:F, 6jlz:E, 6jlz:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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