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BioLiP
>protein
VQAQDYINPLIVQRADPYIYKHTDGYYYFTASVPAYNLIEIRRAKTLNGLANAAPRTIWRKHPDGSGAMSQLIWAPELHY
IDGKWFIYFAASHTKEFDHNGMFQHRMYCIECDNPDPMRDEADWTEHGQIETPLDTFALDATVFEAQKKLYYVWAQKDPA
IKGNSNIYIAEMANPWTLKTKPVMLTKPEYDWETKIFWVNEGPAVLHRNGRFFLTYSASATDENYAMGMLTVAEDADLLD
PTSWSKSETPVFQSNMPIKQFGPGHNSFTVAEDGETDMLVYHCRNYTDIKGDPLYDPNRHTMVQPFTWNDDGTPNFGKPV
PYNYK

The query sequence (length=325) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5m8b:A 325 325 1.0000 1.0000 1.0000 0.0 5m8b:B
2 5m8e:A 323 319 0.7354 0.7399 0.7492 0.0 5m8e:B
3 3k1u:A 314 313 0.6123 0.6338 0.6358 4.73e-152
4 3aki:A 448 315 0.5292 0.3839 0.5460 1.47e-124 3akg:A, 3akh:A
5 3kst:A 291 213 0.1600 0.1787 0.2441 7.96e-07 3kst:B
6 2exh:A 533 329 0.2308 0.1407 0.2280 0.004 2exh:B, 2exh:C, 2exh:D, 2exi:A, 2exi:B, 2exi:C, 2exi:D, 2exj:A, 2exj:B, 2exj:C, 2exj:D, 2exk:A, 2exk:B, 2exk:C, 2exk:D
7 7k1r:A 536 328 0.2246 0.1362 0.2226 0.15 7k1r:B, 7k1r:C, 7k1r:D, 8uws:C, 8uws:D, 8uws:A, 8uws:B
8 5z5d:A 504 189 0.1385 0.0893 0.2381 0.22 5z5f:A, 5z5h:A, 5z5i:A
9 6ms3:A 512 318 0.2062 0.1309 0.2107 0.23 6ms2:A, 6ms3:B
10 1y7b:A 534 238 0.1785 0.1086 0.2437 0.38 1y7b:B, 1y7b:C, 1y7b:D, 1yi7:A, 1yi7:B, 1yi7:C, 1yi7:D
11 5msx:C 440 313 0.2031 0.1500 0.2109 0.81 5msx:A, 5msx:B
12 6a8i:A 318 260 0.1692 0.1730 0.2115 2.1 6a8h:A, 6a8i:B, 3d5z:A, 3d61:A, 6f1g:A
13 3r4z:B 359 147 0.1015 0.0919 0.2245 2.9 3r4z:A
14 3r4z:B 359 101 0.0769 0.0696 0.2475 8.8 3r4z:A
15 8fkb:A 424 69 0.0585 0.0448 0.2754 5.0 6cvc:A, 8fjo:A, 8flo:A, 8gdi:A
16 5gll:A 331 86 0.0677 0.0665 0.2558 8.1 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B
17 5zqx:A 536 80 0.0708 0.0429 0.2875 8.3 5zqs:A, 5zqs:B, 5zqx:B, 5zqx:C, 5zqx:D
18 8qhp:A 410 62 0.0462 0.0366 0.2419 9.5 8qhp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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