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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VPVDYHLLMMFTKAEHNAPLQAKARVALSSLLRLAKFEAHEVLNLHFVSEEASREVAKALLRELLPPAAGFKCKVIFHDV
AVLTDKLFPVVEAMQKYFSAGSGTYYSDSIFFLSVAMHQIMPKEIPRIIQLDLDLKYKTNIRELFEEFDNFLPGAVIGIA
REMQPVYRHTFWQFRHENPKTRVGDPPPEGLPGFNSGVMLLNLEAMRQSPLYSHLLEPSWVQQLADKYHFRGHLGDQDFF
TMIGMEHPELFHVLDCTWNRQLCTWWRDHGYSDVFQAYFRCEGHVKIYHGNCNTPIPE

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4wm0:A 299 298 1.0000 0.9967 1.0000 0.0 4wlm:A, 4wlm:B, 4wlz:A, 4wlz:B, 4wma:A, 4wmb:A, 4wmi:A, 4wmk:A, 4wn2:A, 4wnh:A
2 7ui7:A 613 266 0.2181 0.1060 0.2444 8.28e-14 7ui6:A, 7ui6:B
3 7zvj:B 587 237 0.1879 0.0954 0.2363 1.21e-11 7zvj:A
4 1ss9:A 280 110 0.0973 0.1036 0.2636 0.019 1g9r:A, 1ga8:A
5 3rc8:A 610 68 0.0772 0.0377 0.3382 0.65 3rc3:A
6 7xxf:C 343 62 0.0671 0.0583 0.3226 2.4
7 5lfu:A 487 88 0.0839 0.0513 0.2841 2.6 5lf5:A, 5lfr:A, 5lfr:B, 5lfv:B, 5lfv:A
8 5dj4:A 366 97 0.0872 0.0710 0.2680 4.8 5dj4:B, 5dj4:C, 5dj4:D, 5dj4:E, 6n0m:A, 6n0m:B, 6n0m:C, 6n0m:D, 6n0m:E, 5t0n:A, 5t0n:B, 5t0n:C, 5t0n:D, 5t0n:E
9 5epe:A 248 45 0.0638 0.0766 0.4222 5.6
10 2b4f:A 404 41 0.0369 0.0272 0.2683 8.2 1h12:A, 1xwq:A
11 4cnz:A 100 45 0.0638 0.1900 0.4222 9.7 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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