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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VPSPYVGNLLNKWHDYIMQEKVHESIEKRTEIKQLLSQAEDNKDLVDYFILLDHRHSLCFDQEASMGDVVNMLSKGSHDL
LINFYFELFAGDYEFFKKNYVKAISFYEKAEQKLSSIPNIEETKFAEFHYKIGVAYYEIDQHLVSVNKVTKARDIYKKSD
MWNLEAIQCSLVVGINLYDMGRLDDADAYFRDALTEALDHGYDKPITKIYHNLGLVHWQKGSLELALHYFREAYSHEWLR
DSPKGQQTVYMLSRVLYTMGQNEEAYHWYELGIEMARKFDDHEYKAKHDILYHLYEQPSIDEVKQSLAFLEERNLWPDVS
KIAKGISELYEKKGDLVTSHEFLKRAFYAKEQIQRITEALG

The query sequence (length=361) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6t46:G 365 361 1.0000 0.9890 1.0000 0.0 6t46:A, 6t46:C, 6t46:E
2 8rsv:B 365 364 0.2881 0.2849 0.2857 1.03e-45 8rst:A, 8rsu:A, 8rsv:A, 8rtc:A, 8rtc:B
3 4i9e:A 383 360 0.2715 0.2559 0.2722 6.09e-37 4i9c:A, 4i9e:B, 3ulq:A
4 4gyo:B 359 359 0.2715 0.2730 0.2730 1.66e-32 4gyo:A
5 8rte:A 350 361 0.2825 0.2914 0.2825 5.23e-30 8rte:B
6 8chy:A 272 254 0.1634 0.2169 0.2323 4.19e-07 8bu0:A, 8cig:A, 8ckr:A, 8cqp:C, 8cqq:A
7 8chy:A 272 254 0.1634 0.2169 0.2323 4.19e-07 8bu0:A, 8cig:A, 8ckr:A, 8cqp:C, 8cqq:A
8 8chy:A 272 222 0.1385 0.1838 0.2252 5.96e-06 8bu0:A, 8cig:A, 8ckr:A, 8cqp:C, 8cqq:A
9 8chy:A 272 182 0.1247 0.1654 0.2473 7.14e-06 8bu0:A, 8cig:A, 8ckr:A, 8cqp:C, 8cqq:A
10 4gpk:J 347 202 0.1247 0.1297 0.2228 0.001 4gpk:A, 4gpk:B, 4gpk:C, 4gpk:D, 4gpk:E, 4gpk:F, 4gpk:G, 4gpk:H, 4gpk:I, 4gpk:K, 4gpk:L
11 1na0:B 119 97 0.0637 0.1933 0.2371 0.035 1na3:A, 1na3:B
12 3kd7:A 102 69 0.0443 0.1569 0.2319 0.90 3kd7:B, 3kd7:C, 3kd7:D, 3kd7:E
13 3kd7:A 102 103 0.0637 0.2255 0.2233 4.9 3kd7:B, 3kd7:C, 3kd7:D, 3kd7:E
14 3tze:A 360 58 0.0499 0.0500 0.3103 3.0 3tze:B
15 7yeh:A 1020 101 0.0665 0.0235 0.2376 3.2 4ay5:A, 4ay5:B, 4ay5:C, 4ay5:D, 4ay6:A, 4ay6:B, 4ay6:C, 4ay6:D, 5c1d:A, 4cdr:A, 4cdr:B, 4cdr:C, 4cdr:D, 8cm9:A, 8cm9:B, 8cm9:D, 8cm9:C, 8fe7:A, 8fe7:C, 8fe7:E, 8fe7:G, 8fuf:A, 8fuf:C, 8fuf:E, 8fuf:G, 4gyw:C, 4gz3:C, 4gz5:A, 4gz5:B, 4gz5:C, 4gz5:D, 4gz6:A, 4gz6:B, 4gz6:C, 4gz6:D, 5hgv:C, 6ibo:A, 5lvv:A, 6ma1:A, 6ma2:A, 6ma3:A, 6ma4:A, 6ma5:A, 4n39:A, 4n3a:A, 4n3b:A, 4n3c:A, 5npr:A, 3pe3:A, 3pe3:B, 3pe3:C, 3pe3:D, 3pe4:A, 3pe4:C, 6q4m:A, 3tax:A, 3tax:C, 1w3b:A, 4xi9:A, 4xi9:B, 4xi9:C, 4xi9:D, 4xif:A, 4xif:B, 4xif:C, 4xif:D
16 1yl5:A 247 48 0.0360 0.0526 0.2708 3.8 1c3v:A, 1c3v:B, 1p9l:A, 1p9l:B, 5tjy:A, 5tjz:A, 5ugv:A, 5ugv:B, 1yl5:B, 1yl6:A, 1yl6:B, 1yl7:A, 1yl7:B, 1yl7:C, 1yl7:D, 1yl7:E, 1yl7:F, 1yl7:G, 1yl7:H
17 6wmp:D 1159 73 0.0693 0.0216 0.3425 4.9 6wmr:D, 6wmt:D
18 8qoy:A 1036 72 0.0554 0.0193 0.2778 5.9
19 8d0b:F 915 30 0.0277 0.0109 0.3333 7.2 8d0k:F
20 7opl:A 1070 30 0.0277 0.0093 0.3333 7.4 6as7:A, 9c8v:C, 8d96:C, 8d9d:C, 5exr:C, 5exr:G, 5iud:A, 5iud:D, 5iud:G, 5iud:J, 7n2m:A, 4q5v:A, 4q5v:E, 4qcl:A, 8qj7:A, 7u5c:C, 8vy3:C, 4y97:B, 4y97:D, 4y97:F, 4y97:H
21 7msn:A 417 50 0.0360 0.0312 0.2600 7.6 7msn:B, 7msp:A, 7msp:B
22 4mej:A 167 37 0.0360 0.0778 0.3514 8.5 4mej:C, 4mej:B, 1s2d:A, 1s2d:B, 1s2d:C, 1s2g:A, 1s2g:B, 1s2g:C, 1s2i:A, 1s2i:B, 1s2i:C, 1s3f:A, 1s3f:B, 1s3f:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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