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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTTENLRLQYNHSGACNKKQLDPTRLRLIRHYVEAVYPVEKME
EVWHYECIPSIDERCRRPNRKKCDI

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v9g:D 112 103 0.9810 0.9196 1.0000 2.16e-74 7v9f:A, 7v9g:A, 7v9g:G, 7v9g:J, 7v9i:A, 7w27:C
2 4v6i:Bs 257 80 0.2095 0.0856 0.2750 1.3 8ccs:DD, 8cdl:DD, 8cdr:DD, 8ceh:DD, 8cf5:DD, 8cg8:DD, 8cgn:DD, 8civ:DD, 8cku:DD, 8cmj:DD, 8eub:VA, 8evq:V, 8evr:V, 8evs:V, 8ewb:V, 6gq1:P0, 6gqb:P0, 6gqv:P0, 3j16:G, 5juo:VA, 5jup:VA, 5jus:VA, 5jut:VA, 5juu:VA, 8k2d:P0, 8k82:P0, 7osa:uL10, 7osm:uL10, 7rr5:P0, 4v7h:B8, 6woo:r, 6xiq:P0, 8y0u:P0
3 6sjv:A 529 66 0.1905 0.0378 0.3030 4.4 6sqc:A
4 8v45:B 383 42 0.1143 0.0313 0.2857 5.0 8v45:A, 8v45:F, 8v45:C
5 6m0w:A 1032 81 0.2095 0.0213 0.2716 5.4 6m0v:A, 6m0x:A
6 8s9u:D 518 41 0.1238 0.0251 0.3171 8.1 8s9t:D, 8s9v:D, 8s9x:D
7 6rja:C 815 42 0.1524 0.0196 0.3810 8.7 6rja:F, 6rjg:C
8 4pi0:E 390 41 0.1333 0.0359 0.3415 8.9 4phz:A, 4phz:E, 4phz:I, 4pi0:A, 4pi0:I, 4pi2:E, 4pi2:A, 4pi2:I, 3rfr:A, 3rfr:E, 3rfr:I, 7s4m:A, 7s4m:E, 7s4m:I
9 6rj9:C 836 42 0.1524 0.0191 0.3810 9.4 6rjd:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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