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BioLiP
>protein
VPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTTENLRLQYNHSGACNKKQLDPTRLRLIRHYVEAVYPVEKME
EVWHYECIPSIDERCRRPN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7v9g:D 112 97 0.9798 0.8661 1.0000 1.20e-69 7v9f:A, 7v9g:A, 7v9g:G, 7v9g:J, 7v9i:A, 7w27:C
2 4v6i:Bs 257 79 0.2222 0.0856 0.2785 1.3 8ccs:DD, 8cdl:DD, 8cdr:DD, 8ceh:DD, 8cf5:DD, 8cg8:DD, 8cgn:DD, 8civ:DD, 8cku:DD, 8cmj:DD, 8eub:VA, 8evq:V, 8evr:V, 8evs:V, 8ewb:V, 6gq1:P0, 6gqb:P0, 6gqv:P0, 3j16:G, 5juo:VA, 5jup:VA, 5jus:VA, 5jut:VA, 5juu:VA, 8k2d:P0, 8k82:P0, 7osa:uL10, 7osm:uL10, 7rr5:P0, 4v7h:B8, 6woo:r, 6xiq:P0, 8y0u:P0
3 6m0w:A 1032 81 0.2222 0.0213 0.2716 3.8 6m0v:A, 6m0x:A
4 6sjv:A 529 66 0.2020 0.0378 0.3030 3.9 6sqc:A
5 8v45:B 383 42 0.1212 0.0313 0.2857 4.7 8v45:A, 8v45:F, 8v45:C
6 6rja:C 815 42 0.1616 0.0196 0.3810 6.8 6rja:F, 6rjg:C
7 8s9u:D 518 41 0.1313 0.0251 0.3171 7.0 8s9t:D, 8s9v:D, 8s9x:D
8 6rj9:C 836 42 0.1616 0.0191 0.3810 7.2 6rjd:C
9 4pi0:E 390 41 0.1414 0.0359 0.3415 7.7 4phz:A, 4phz:E, 4phz:I, 4pi0:A, 4pi0:I, 4pi2:E, 4pi2:A, 4pi2:I, 3rfr:A, 3rfr:E, 3rfr:I, 7s4m:A, 7s4m:E, 7s4m:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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