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BioLiP
>protein
VPQTVAWSAKTGAVMVLSNILCIVAGRYVIQVKSGSFAGFGLPELLASTSLGHIVGSGAILGLSYVGVL

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wm6:K 69 69 1.0000 1.0000 1.0000 3.12e-43 8wmj:K, 8wmv:K, 8wmw:K
2 7y7b:K 78 77 0.8551 0.7564 0.7662 1.14e-34 7y8a:K
3 6kif:K 78 77 0.5362 0.4744 0.4805 2.21e-18 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
4 7y5e:KN 70 66 0.5217 0.5143 0.5455 2.81e-16 7y5e:K2, 7y7a:K7, 7y7a:Ko
5 7fix:K1 79 79 0.4783 0.4177 0.4177 1.15e-14 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
6 8asp:k 77 76 0.4783 0.4286 0.4342 2.71e-13 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
7 6vpv:K 78 77 0.4348 0.3846 0.3896 4.29e-13 6vpv:k, 6vpv:9
8 4l6v:K 80 78 0.4783 0.4125 0.4231 1.40e-12 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
9 6k61:k 78 69 0.4203 0.3718 0.4203 2.23e-12 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
10 8wey:K 63 58 0.3913 0.4286 0.4655 4.30e-11
11 7s3d:K 75 74 0.5072 0.4667 0.4730 8.52e-11 7s3d:T, 7s3d:k
12 7m75:K 47 48 0.3478 0.5106 0.5000 2.62e-09 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
13 6tcl:K 60 57 0.3478 0.4000 0.4211 3.59e-09 6tcl:KK
14 4kt0:K 53 62 0.3623 0.4717 0.4032 1.04e-08
15 6kmx:aK 46 45 0.3623 0.5435 0.5556 1.48e-08 6kmx:bK, 6kmx:cK
16 7wfd:AK 65 61 0.3478 0.3692 0.3934 1.83e-07 7wfe:BK, 7wg5:AK, 7wg5:BK
17 5zgb:K 59 66 0.3478 0.4068 0.3636 3.16e-06 7blz:K, 6fos:K, 5zgh:K
18 8j7a:K 56 58 0.3333 0.4107 0.3966 3.68e-06
19 8j6z:K 84 80 0.3478 0.2857 0.3000 6.12e-05 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
20 8bcv:K 88 80 0.3623 0.2841 0.3125 6.17e-05 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
21 8wgh:K 83 82 0.3478 0.2892 0.2927 1.21e-04
22 7a4p:K 86 83 0.3913 0.3140 0.3253 8.82e-04 6zzx:K, 6zzy:K
23 6igz:K 80 70 0.3333 0.2875 0.3286 0.001
24 7qco:K 65 24 0.2319 0.2462 0.6667 0.007 7qco:R, 7qco:r, 7qco:k
25 8htu:K 81 74 0.3188 0.2716 0.2973 0.008 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
26 4y28:K 57 56 0.2754 0.3333 0.3393 0.010
27 7dr2:aK 69 68 0.3478 0.3478 0.3529 0.021 7dr0:K, 7dr2:cK
28 4xk8:k 46 26 0.2029 0.3043 0.5385 0.074 4xk8:K
29 8cmo:K 89 36 0.2319 0.1798 0.4444 0.74
30 7dz7:K 86 49 0.2609 0.2093 0.3673 0.83 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
31 8wgh:G 98 31 0.2029 0.1429 0.4516 1.4
32 4pdy:A 332 23 0.1739 0.0361 0.5217 2.0
33 3lw5:G 95 31 0.1884 0.1368 0.4194 2.2 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
34 2vhf:A 341 48 0.2319 0.0469 0.3333 2.3 2vhf:B
35 5zji:G 97 31 0.2029 0.1443 0.4516 2.3
36 7wg5:AG 99 31 0.2029 0.1414 0.4516 2.3 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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