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BioLiP
>protein
VPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRA

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ou6:A 76 70 1.0000 0.9211 1.0000 6.73e-48 4ou6:B, 4ou6:C, 4ou6:D, 4ou6:E, 4ou7:A, 4ou7:B, 4ou7:C, 4ou7:D, 4ou7:E
2 3s5w:B 414 36 0.1429 0.0242 0.2778 0.79 3s5w:A, 3s61:A, 3s61:B
3 6xrx:A 551 38 0.1857 0.0236 0.3421 2.3
4 8b3f:b 534 52 0.2000 0.0262 0.2692 6.4 8b3d:b, 7oo3:b, 7oob:b, 7oop:b, 7opc:b, 7opd:b
5 7evo:D 200 27 0.1571 0.0550 0.4074 7.5 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
6 6hqv:A 1555 31 0.1857 0.0084 0.4194 7.6 6hqv:B
7 7k5n:A 237 14 0.1143 0.0338 0.5714 8.0
8 3j5s:D 554 21 0.1714 0.0217 0.5714 8.3
9 1wil:A 89 32 0.1571 0.1236 0.3438 8.6 5xht:A
10 3mru:A 490 9 0.1000 0.0143 0.7778 9.8 3mru:B
11 4pbp:B 210 61 0.2286 0.0762 0.2623 9.9 4pbp:A, 4pbp:C
12 5h59:A 311 27 0.1571 0.0354 0.4074 10.0 5h5j:A, 5h5j:C, 1jb9:A, 3lo8:A, 3lvb:A, 5vw2:A, 5vw3:A, 5vw4:A, 5vw5:A, 5vw6:A, 5vw7:A, 5vw8:A, 5vw9:A, 5vwa:A, 5vwb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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