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BioLiP
>protein
VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVERDDTEFQHPCF
LRGQEQLLENIKRK

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dcj:B 110 101 0.9681 0.8273 0.9010 1.03e-63 5d5u:B, 5d5v:B, 5d5v:D, 7dcj:A, 7dcs:A, 7dcs:B, 7dcs:C, 7dcs:D, 7dcs:E, 7dcs:F, 7dct:A, 7dct:B, 7dct:C, 7dct:D, 7dct:E, 7dct:F, 5hdn:A, 5hdn:C
2 7dcu:A 101 94 0.7021 0.6535 0.7021 2.71e-43 7dci:A, 7dcu:C
3 5d8k:B 106 104 0.7234 0.6415 0.6538 2.22e-42 5d8l:B, 5d8l:D, 5d8l:F, 5d8l:H, 7dcu:B
4 5d5x:B 99 97 0.4681 0.4444 0.4536 3.65e-24 5d5w:B, 5d5x:E
5 1fyk:A 88 66 0.4149 0.4432 0.5909 1.21e-23 3hts:B
6 1u17:A 185 78 0.2128 0.1081 0.2564 1.2 1np1:A, 1np1:B, 2np1:A, 2np1:B, 3np1:A, 3np1:B, 4np1:A, 4np1:B, 1u17:B, 1u18:A, 1u18:B
7 7yni:A 566 31 0.1170 0.0194 0.3548 2.6
8 7sla:A 585 31 0.1170 0.0188 0.3548 2.6 7sl8:A
9 7wmv:A 602 31 0.1170 0.0183 0.3548 2.6
10 2at0:X 184 62 0.1702 0.0870 0.2581 4.3 2at3:X, 2at5:X, 2at6:X, 2at8:X, 3c76:X, 3c77:X, 3c78:X, 1d2u:A, 1d3s:A, 1eqd:A, 1erx:A, 3fll:A, 4gnw:A, 4gnw:B, 4grj:A, 4grj:B, 4hpa:A, 4hpb:A, 4hpc:A, 4hpd:A, 5hwz:A, 1ike:A, 1ikj:A, 1koi:A, 1ml7:A, 3mvf:A, 1np4:A, 2ofr:X, 1sxu:A, 1sxw:A, 1sxx:A, 1sxy:A, 1sy0:A, 1sy1:A, 1sy2:A, 1sy3:A, 3tga:A, 3tgb:A, 3tgc:A, 1u0x:A, 1x8n:A, 1x8o:A, 1x8p:A, 1x8q:A, 1ywa:A, 1ywb:A, 1ywc:A, 1ywd:A
11 3o8o:E 752 35 0.1170 0.0146 0.3143 4.6 3o8o:A, 3o8o:C, 3o8o:G
12 7oya:a1 147 46 0.1702 0.1088 0.3478 6.9 7oyb:a1
13 1u2g:B 359 32 0.0957 0.0251 0.2812 7.4 2fr8:A
14 1f8g:A 382 32 0.0957 0.0236 0.2812 7.4 1f8g:B, 1f8g:C, 1f8g:D, 2frd:A, 2frd:B, 2fsv:A, 1hzz:A, 1l7e:A, 1l7e:D, 1nm5:A, 1nm5:B, 2oo5:A, 2oo5:B, 2oor:A, 2oor:B, 1ptj:A, 1u28:A, 1u28:B, 1u2d:A, 1u2d:B, 1u2g:A, 1xlt:A, 1xlt:B, 1xlt:D, 1xlt:E, 1xlt:H, 1xlt:G
15 7eld:A 1137 45 0.1596 0.0132 0.3333 9.4 7ele:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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