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BioLiP
>protein
VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNIEGR

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1kvj:A 79 71 0.9467 0.8987 1.0000 1.76e-48 3cjk:B, 2k1r:A, 5t7l:B
2 1s6u:A 76 72 0.4800 0.4737 0.5000 3.76e-21
3 6a71:B 71 66 0.4133 0.4366 0.4697 3.88e-19 6a72:A
4 1y3j:A 77 71 0.4133 0.4026 0.4366 1.65e-14
5 1k0v:A 73 71 0.3467 0.3562 0.3662 1.98e-12 3i9z:A, 2qif:A, 2qif:B
6 1kqk:A 80 74 0.3333 0.3125 0.3378 3.94e-11
7 1yjt:A 75 66 0.3333 0.3333 0.3788 7.94e-11 1yjv:A
8 1afj:A 72 70 0.2800 0.2917 0.3000 2.38e-10
9 8ioy:A 816 66 0.2800 0.0257 0.3182 3.92e-10
10 1oq6:A 76 72 0.3333 0.3289 0.3472 5.59e-10
11 1fvs:A 72 66 0.3200 0.3333 0.3636 8.39e-09 2ggp:B
12 4a48:B 69 68 0.2933 0.3188 0.3235 1.27e-08 4a48:A, 4a4j:A, 2xmw:A
13 6ff2:A 67 63 0.2667 0.2985 0.3175 1.51e-08 6ff2:B
14 3dxs:X 74 66 0.3200 0.3243 0.3636 5.58e-08
15 7si6:A 873 72 0.2933 0.0252 0.3056 9.70e-08 7si3:A, 7si7:A
16 7si6:A 873 88 0.3333 0.0286 0.2841 5.18e-07 7si3:A, 7si7:A
17 8q74:A 783 62 0.2133 0.0204 0.2581 0.001 8q75:A, 8q76:A
18 2kkh:A 95 60 0.2000 0.1579 0.2500 0.076
19 1mwz:A 73 54 0.1867 0.1918 0.2593 0.23
20 4v3p:SC 195 39 0.1333 0.0513 0.2564 0.39 8ip8:eb, 8ip9:eb, 8ipa:eb, 8ipb:eb, 8jiw:BJ, 8r6f:J, 4v7e:BJ
21 7qix:Q 184 38 0.0933 0.0380 0.1842 0.55 8auv:b, 8b2l:b1, 7qiz:GA
22 6okp:K 133 51 0.2667 0.1504 0.3922 1.1 7ugo:N, 7ugp:M, 7ugp:N
23 4r0v:A 419 42 0.1867 0.0334 0.3333 1.4 6gl6:A, 6gm5:A, 6gm6:A, 6gm7:A, 3lx4:A, 3lx4:B, 2n0s:A, 4r0v:B
24 2bvf:A 453 30 0.1733 0.0287 0.4333 1.7 2bvf:B, 2bvg:A, 2bvg:B, 2bvg:C, 2bvg:D, 2bvh:A, 2bvh:B, 2bvh:C, 2bvh:D
25 2h6b:A 239 39 0.1600 0.0502 0.3077 2.7 3e5u:C, 3e5u:D, 3e5u:A, 3e5u:B, 3e5x:A, 3e5x:B, 3e5x:C, 3e5x:D, 3e6b:A, 3e6b:B, 3e6c:C, 2h6b:B
26 6om8:D 468 31 0.1467 0.0235 0.3548 3.2 6om8:A, 6om8:B, 6om8:C, 6om8:E, 6om8:F, 6om8:G, 6om8:H, 6om8:I, 6om8:J, 6om8:K, 6om8:L
27 2aly:B 785 21 0.1067 0.0102 0.3810 4.1 2amc:B, 1eiy:B, 3hfz:B, 2iy5:B, 1jjc:B, 3teh:B, 4tva:B
28 3ojf:A 257 18 0.1067 0.0311 0.4444 8.2 3ojf:D, 3ojf:B, 3ojf:C, 2qio:A, 2qio:B, 2qio:C, 2qio:D, 5ycr:A, 5ycr:B, 5ycr:C, 5ycr:D, 5ycs:A, 5ycs:B, 5ycs:C, 5ycs:D
29 7d5c:A 919 46 0.2000 0.0163 0.3261 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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