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BioLiP
>protein
VNFNLKANTTYLRLVEENDAEFICTLRNNDKLNTYISKSTGDIKSQAEWIRNYKNRENNGEEYYFIIFRSDDQSPIGTVR
LYDFHENPKSFCWGSWILNEHKTKYAAVESALLVYEAGFSTLGFEQSHFEVMKGNDKVHSFHLKMGAQKISEDDENIYYI
FPKSKYKENKIQYARFLGKLEHHHHHH

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ktc:A 187 187 1.0000 1.0000 1.0000 3.61e-141 5ktd:A
2 6d72:B 176 140 0.1925 0.2045 0.2571 0.19 6d72:A
3 8q3b:B 1104 65 0.1016 0.0172 0.2923 0.25
4 8q3k:B 1020 61 0.0909 0.0167 0.2787 2.0
5 3wr7:A 170 169 0.2032 0.2235 0.2249 2.6 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
6 7wge:A 698 55 0.0802 0.0215 0.2727 3.9
7 7mwm:A 74 29 0.0588 0.1486 0.3793 4.5 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
8 2ky8:A 70 29 0.0588 0.1571 0.3793 4.9
9 8sr6:A 451 64 0.1016 0.0421 0.2969 6.4 5czy:A, 8swi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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