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BioLiP
>protein
VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLK

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e8o:D 76 76 1.0000 0.9868 0.9868 2.71e-48 1e8o:B, 6frk:z, 3jaj:S4, 3jan:S4, 7obr:t, 6r6g:AE, 1ry1:D
2 4uyk:B 90 87 1.0000 0.8333 0.8621 6.44e-47 5aox:B, 5aox:E, 7nfx:t, 4uyj:B, 4uyj:D
3 4v58:G 2060 35 0.1600 0.0058 0.3429 1.5 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
4 6lsr:1 247 56 0.2400 0.0729 0.3214 2.5
5 8qdx:C 837 67 0.2400 0.0215 0.2687 5.9 9gbv:A, 9gbv:C, 9ggq:C, 9ggq:A, 8qdx:A, 8qqi:A, 8qqi:C, 8qqs:A, 8qqs:C, 8qqu:C, 6rks:C, 6rks:A, 6rku:C, 6rku:A, 6rkv:C, 6rkv:A, 6rkw:C, 6rkw:A, 4tma:E, 2y3p:A, 2y3p:B, 7z9c:A, 7z9c:C, 7z9g:A, 7z9g:C, 7z9k:A, 7z9k:C, 7z9m:A, 7z9m:C
6 7kbu:A 221 21 0.1067 0.0362 0.3810 9.5 7kbu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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