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BioLiP
>protein
VKVKFKYKGEEKEVDTSKIKKVWRVGKAVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREK

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1wvl:A 80 64 0.9844 0.7875 0.9844 8.02e-40 1azp:A, 1azq:A, 1ca5:A, 1ca6:A, 8cmn:AA, 8q2m:AA, 8qpc:AA, 1wd0:A, 1wd1:A, 1wto:A, 1wtp:A, 1wtp:B, 1wtq:A, 1wtr:A, 1wtv:A, 1wtw:A, 1wtx:A, 1xyi:A
2 5b03:D 333 56 0.7656 0.1471 0.8750 1.51e-26 5b00:A, 5b00:B, 5b00:C, 5b03:A, 5b03:B, 5b03:C, 5b0k:A, 5b0k:B, 5b0k:C, 5b0k:D, 1bbx:C, 1bbx:D, 1bf4:A, 1bnz:A, 1c8c:A, 5gwv:D, 6j8v:D, 6j8w:D
3 7c1m:A 67 61 0.6094 0.5821 0.6393 3.53e-20
4 8bsj:SL 109 21 0.1719 0.1009 0.5238 2.4 8br8:SL, 8brm:SL, 8bsi:SL, 8btd:SL, 8btr:SL, 8fvy:K, 8g4s:K
5 7k5k:A 545 55 0.2031 0.0239 0.2364 2.7 7k5k:B, 7k5k:C, 7k5k:D, 7k5k:E, 7k5k:F, 6wvv:A, 6wvv:B, 6wvv:C, 6wvv:D, 6wvv:E
6 6djv:C 615 61 0.2969 0.0309 0.3115 3.3 6dju:A, 6dju:B, 6dju:C, 6djv:A, 6djv:B
7 6w6h:C 636 61 0.2969 0.0299 0.3115 3.4 6w6e:B, 6w6e:C, 6w6g:A, 6w6g:B, 6w6g:C, 6w6h:A, 6w6h:B, 6w6h:F, 6w6i:A, 6w6i:B, 6w6i:C, 6w6j:A, 6w6j:B, 6w6j:C
8 7oq6:A 399 11 0.1406 0.0226 0.8182 5.9 7oq6:B
9 2pmq:B 374 46 0.2188 0.0374 0.3043 7.0 4h2h:A, 4h2h:B, 4h2h:C, 4h2h:D, 4h2h:E, 4h2h:F, 4h2h:G, 4h2h:H, 2pmq:A
10 5kp7:A 410 64 0.2344 0.0366 0.2344 9.3 5kp8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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