Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRR

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gt0:D 79 74 1.0000 0.9367 1.0000 7.21e-51 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
2 6l6y:D 80 74 0.6216 0.5750 0.6216 6.93e-34 4a3n:A, 3f27:D, 6l6y:F
3 4s2q:D 76 74 0.6486 0.6316 0.6486 2.58e-33 4euw:A
4 6t78:A 77 74 0.6486 0.6234 0.6486 2.21e-32 6t78:B, 3u2b:C
5 4y60:C 76 73 0.5676 0.5526 0.5753 6.73e-31
6 2gzk:A 159 71 0.6486 0.3019 0.6761 7.13e-31 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
7 2gzk:A 159 49 0.2027 0.0943 0.3061 0.001 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
8 7m5w:A 138 70 0.3784 0.2029 0.4000 7.46e-13 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
9 2lef:A 86 71 0.2973 0.2558 0.3099 2.69e-08
10 5jh0:D 157 62 0.2838 0.1338 0.3387 1.30e-06 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
11 5jh0:D 157 55 0.1757 0.0828 0.2364 0.22 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
12 1j5n:A 93 49 0.2297 0.1828 0.3469 2.92e-06
13 1e7j:A 74 43 0.2027 0.2027 0.3488 1.75e-05 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
14 6cik:N 90 49 0.2027 0.1667 0.3061 0.003 6cg0:N, 6cim:N
15 4qr9:A 75 62 0.2703 0.2667 0.3226 0.013 4qr9:B
16 6cij:N 133 38 0.1757 0.0977 0.3421 0.035 5zdz:N, 5ze1:N, 5ze2:N
17 6hb4:A 197 51 0.1622 0.0609 0.2353 0.066 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
18 6hb4:A 197 54 0.2297 0.0863 0.3148 6.9 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
19 7zie:B 185 63 0.3243 0.1297 0.3810 0.12 7zie:A
20 4uii:A 132 35 0.1757 0.0985 0.3714 0.25 4uii:B
21 6zm7:CE 124 33 0.1622 0.0968 0.3636 0.38 8k2c:CE, 8xsy:CE, 6z6l:CE, 6zme:CE
22 4pvi:A 328 36 0.1622 0.0366 0.3333 1.4
23 6oog:A 252 30 0.1351 0.0397 0.3333 2.9
24 6nee:B 252 36 0.1622 0.0476 0.3333 3.2 6nee:A
25 4ff7:A 247 27 0.1216 0.0364 0.3333 6.6 4ff7:B, 7tim:A, 7tim:B, 2ypi:A, 2ypi:B, 3ypi:A, 3ypi:B
26 4v4n:AT 84 28 0.1081 0.0952 0.2857 8.1 4v6u:BT
27 6i9k:A 310 35 0.1622 0.0387 0.3429 8.1
28 1amk:A 250 34 0.1351 0.0400 0.2941 8.7 7abx:A, 7az3:A, 7az4:A, 7az9:A, 7aza:A, 1if2:A, 1n55:A, 1qds:A, 2vxn:A, 2y61:A, 2y62:A, 2y63:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417